RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C1orf189Q5VU69 101 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 KCTD11Q693B1 232 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 RAET1GQ6H3X3 334 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ASPHD2Q6ICH7 369 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ETFRF1Q6IPR1 90 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ANKRD26P1Q6NSI1 321 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 XKRXQ6PP77 449 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 AFTPHQ6ULP2 937 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PLEKHG7Q6ZR37 379 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 RBM43Q6ZSC3 357 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNF767PQ75MW2 155 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 P4HA3Q7Z4N8 544 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PRSS42Q7Z5A4 293 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 DPPA2Q7Z7J5 298 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 NT5DC3Q86UY8 548 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MISPQ8IVT2 679 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CNTN4Q8IWV2 1026 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CTAGE3PQ8IX95 158 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 NELFCDQ8IXH7 590 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TMEM61Q8N0U2 210 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 LRRC17Q8N6Y2 441 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 EIF1ADQ8N9N8 165 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 MFSD9Q8NBP5 474 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TMEM35BQ8NCS4 154 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TMEM104Q8NE00 496 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OR2D3Q8NGH3 330 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OR52J3Q8NH60 311 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OR6X1Q8NH79 312 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 OR10J5Q8NHC4 309 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 LRRC20Q8TCA0 184 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 FBXO25Q8TCJ0 367 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MARCH1Q8TCQ1 289 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 DTX3LQ8TDB6 740 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CKAP2Q8WWK9 683 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 FBXO32Q969P5 355 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TMBIM1Q969X1 311 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TADA1Q96BN2 335 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TESCQ96BS2 214 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ECHDC3Q96DC8 303 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 RAB3CQ96E17 227 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SGTBQ96EQ0 304 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MRPL48Q96GC5 212 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 PLEKHA8Q96JA3 519 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNF514Q96K75 400 aaPredicted RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 PPP1R36Q96LQ0 422 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PPP3R2Q96LZ3 170 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SERPINB11Q96P15 392 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PPP1R2P1Q96PQ5 205 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TGS1Q96RS0 853 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 RAB40CQ96S21 281 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CYP2S1Q96SQ9 504 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SSX3Q99909 188 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TMED9Q9BVK6 235 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MRPS26Q9BYN8 205 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 POTEKPQ9BYX7 375 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 TRIM9Q9C026 710 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CCDC90BQ9GZT6 254 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 GOLPH3Q9H4A6 298 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZDHHC6Q9H6R6 413 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CYP3A43Q9HB55 503 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 GPR173Q9NS66 373 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CENPMQ9NSP4 180 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 FAM212BQ9NTI7 297 aaPredicted RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 ABCB8Q9NUT2 735 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 SOHLH2Q9NX45 425 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PEF1Q9UBV8 284 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 WARS2Q9UGM6 360 aaKnown RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 CLEC2DQ9UHP7 191 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ZNF229Q9UJW7 825 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 APPL1Q9UKG1 709 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 STAP1Q9ULZ2 295 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 MGAT4BQ9UQ53 548 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 CCDC141Q6ZP82 1450 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ARAP1Q96P48 1450 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 INO80Q9ULG1 1556 aaPredicted RBP1.46□□□□□ -2.18
NUP54-208ENST00000508604 VPS8Q8N3P4 1428 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 PSME4Q14997 1843 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 WNK3Q9BYP7 1800 aa1.46□□□□□ -2.18
NUP54-208ENST00000508604 ARHGAP21Q5T5U3 1957 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ITSN2Q9NZM3 1697 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PLXNC1O60486 1568 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 SAMD9Q5K651 1589 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 A0A1W2PP64 1363 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 PNPLA6Q8IY17 1366 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 A0A0U1RQS6 177 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 A0A1W2PRV1 198 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 FAM92AA1XBS5 289 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RFPL4AA6NLU0 287 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 LRRN3E7EW58 273 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 RFPL4AL1F8VTS6 287 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 K7ERI5 159 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TLR4O00206 839 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 CDC7O00311 574 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 ZNF263O14978 683 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 TCAPO15273 167 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 NUPL2O15504 423 aaKnown RBP1.45□□□□□ -2.18
NUP54-208ENST00000508604 CHP2O43745 196 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 VEGFDO43915 354 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 BANF1O75531 89 aa1.45□□□□□ -2.18
NUP54-208ENST00000508604 MMP23AO75900 390 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms