RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 RIPK1Q13546 671 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 PDK3Q15120 406 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 CST9Q5W186 159 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 RNF165Q6ZSG1 346 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 USP50Q70EL3 339 aaPredicted RBP3.01□□□□□ -1.93
SMC4-224ENST00000494612 NLRP9Q7RTR0 991 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 RALGPS2Q86X27 583 aaPredicted RBP3.01□□□□□ -1.93
SMC4-224ENST00000494612 RDH10Q8IZV5 341 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 CCDC71LQ8N9Z2 235 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 OR1L4Q8NGR5 311 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 ARPC1AQ92747 370 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 UFD1Q92890 307 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 OXGR1Q96P68 337 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 KCNA7Q96RP8 456 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 FMO2Q99518 471 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 ASB8Q9H765 288 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 YY1AP1Q9H869 796 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 NHEJ1Q9H9Q4 299 aaPredicted RBP3.01□□□□□ -1.93
SMC4-224ENST00000494612 C6orf203Q9P0P8 240 aaPredicted RBP3.01□□□□□ -1.93
SMC4-224ENST00000494612 TMCO1Q9UM00 188 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 CDH10Q9Y6N8 788 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 SCN11AQ9UI33 1791 aa3.01□□□□□ -1.93
SMC4-224ENST00000494612 BCORQ6W2J9 1755 aa3□□□□□ -1.93
SMC4-224ENST00000494612 CLRN2A0PK11 232 aa3□□□□□ -1.93
SMC4-224ENST00000494612 NBR2O15453 112 aa3□□□□□ -1.93
SMC4-224ENST00000494612 TIMM8AO60220 97 aaPredicted RBP3□□□□□ -1.93
SMC4-224ENST00000494612 NPIPB7O75200 414 aa3□□□□□ -1.93
SMC4-224ENST00000494612 DBTP11182 482 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 ABOP16442 354 aa3□□□□□ -1.93
SMC4-224ENST00000494612 FMO3P31513 532 aa3□□□□□ -1.93
SMC4-224ENST00000494612 DDOSTP39656 456 aa3□□□□□ -1.93
SMC4-224ENST00000494612 EPS15P42566 896 aa3□□□□□ -1.93
SMC4-224ENST00000494612 DUSP3P51452 185 aaPredicted RBP3□□□□□ -1.93
SMC4-224ENST00000494612 KPNA2P52292 529 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 CDK16Q00536 496 aa3□□□□□ -1.93
SMC4-224ENST00000494612 PDIA2Q13087 525 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 SLC39A6Q13433 755 aa3□□□□□ -1.93
SMC4-224ENST00000494612 ZMYND11Q15326 602 aa3□□□□□ -1.93
SMC4-224ENST00000494612 KLHL38Q2WGJ6 581 aa3□□□□□ -1.93
SMC4-224ENST00000494612 PARP15Q460N3 678 aa3□□□□□ -1.93
SMC4-224ENST00000494612 C1orf100Q5SVJ3 147 aa3□□□□□ -1.93
SMC4-224ENST00000494612 C1orf220Q5T0J3 134 aa3□□□□□ -1.93
SMC4-224ENST00000494612 OR2A2Q6IF42 318 aa3□□□□□ -1.93
SMC4-224ENST00000494612 RFLNAQ6ZTI6 216 aa3□□□□□ -1.93
SMC4-224ENST00000494612 GDPD3Q7L5L3 318 aa3□□□□□ -1.93
SMC4-224ENST00000494612 EFL1Q7Z2Z2 1120 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 NBPF5PQ86XG9 351 aaPredicted RBP3□□□□□ -1.93
SMC4-224ENST00000494612 TTC5Q8N0Z6 440 aa3□□□□□ -1.93
SMC4-224ENST00000494612 BHLHE23Q8NDY6 225 aa3□□□□□ -1.93
SMC4-224ENST00000494612 MAGEE2Q8TD90 523 aaPredicted RBP3□□□□□ -1.93
SMC4-224ENST00000494612 RNF138Q8WVD3 245 aa3□□□□□ -1.93
SMC4-224ENST00000494612 DNAJA4Q8WW22 397 aaPredicted RBP3□□□□□ -1.93
SMC4-224ENST00000494612 UCN3Q969E3 161 aa3□□□□□ -1.93
SMC4-224ENST00000494612 TBRG4Q969Z0 631 aaKnown RBP eCLIP3□□□□□ -1.93
SMC4-224ENST00000494612 COQ2Q96H96 371 aa3□□□□□ -1.93
SMC4-224ENST00000494612 MTMR9Q96QG7 549 aa3□□□□□ -1.93
SMC4-224ENST00000494612 HIST1H4GQ99525 98 aa3□□□□□ -1.93
SMC4-224ENST00000494612 RASL11BQ9BPW5 248 aa3□□□□□ -1.93
SMC4-224ENST00000494612 SELENOIQ9C0D9 397 aa3□□□□□ -1.93
SMC4-224ENST00000494612 NXF3Q9H4D5 531 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 SLC25A22Q9H936 323 aa3□□□□□ -1.93
SMC4-224ENST00000494612 LRRC40Q9H9A6 602 aa3□□□□□ -1.93
SMC4-224ENST00000494612 MCCC2Q9HCC0 563 aa3□□□□□ -1.93
SMC4-224ENST00000494612 NYAP2Q9P242 653 aa3□□□□□ -1.93
SMC4-224ENST00000494612 KCNIP3Q9Y2W7 256 aa3□□□□□ -1.93
SMC4-224ENST00000494612 TDRD6O60522 2096 aaKnown RBP3□□□□□ -1.93
SMC4-224ENST00000494612 AKAP11Q9UKA4 1901 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 GJE1A6NN92 205 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 E9PBE3 544 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 HSD17B6O14756 317 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 TPM2P07951 284 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 TAGLN2P37802 199 aaKnown RBP2.99□□□□□ -1.93
SMC4-224ENST00000494612 CTRLP40313 264 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 ZNF133P52736 654 aaPredicted RBP2.99□□□□□ -1.93
SMC4-224ENST00000494612 NUP107P57740 925 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 TAS2R19P59542 299 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 SEC61GP60059 68 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 TNFRSF17Q02223 184 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 ZNF763Q0D2J5 394 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 DAZ2Q13117 558 aaKnown RBP2.99□□□□□ -1.93
SMC4-224ENST00000494612 NRF1Q16656 503 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 MICBQ29980 383 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 GPR157Q5UAW9 335 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 ZNF620Q6ZNG0 422 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 UTS2BQ765I0 119 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 PAQR7Q86WK9 346 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 SUMF2Q8NBJ7 301 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 OR6C4Q8NGE1 309 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 NEIL3Q8TAT5 605 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 ZNF606Q8WXB4 792 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 ELSPBP1Q96BH3 223 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 SLC41A3Q96GZ6 507 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 MBOAT4Q96T53 435 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 P2RY13Q9BPV8 354 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 TRIM62Q9BVG3 475 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 GCOM2Q9BZD3 368 aaPredicted RBP2.99□□□□□ -1.93
SMC4-224ENST00000494612 PLGRKTQ9HBL7 147 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 DAZ3Q9NR90 486 aaKnown RBP2.99□□□□□ -1.93
SMC4-224ENST00000494612 KCNIP1Q9NZI2 227 aa2.99□□□□□ -1.93
SMC4-224ENST00000494612 MMP17Q9ULZ9 603 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms