RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 MRPL39Q9NYK5 338 aaKnown RBP10.85□□□□□ -0.67
SKA1-205ENST00000494518 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.85□□□□□ -0.67
SKA1-205ENST00000494518 RAB21Q9UL25 225 aa10.85□□□□□ -0.67
SKA1-205ENST00000494518 SPEF1Q9Y4P9 236 aa10.85□□□□□ -0.67
SKA1-205ENST00000494518 CORINQ9Y5Q5 1042 aa10.85□□□□□ -0.67
SKA1-205ENST00000494518 MGAM2Q2M2H8 2515 aa10.85□□□□□ -0.67
SKA1-205ENST00000494518 B4DSR2 109 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 KPNA4O00629 521 aaPredicted RBP10.84□□□□□ -0.67
SKA1-205ENST00000494518 POLR3GO15318 223 aaPredicted RBP10.84□□□□□ -0.67
SKA1-205ENST00000494518 CDC14BO60729 498 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 CLPTM1O96005 669 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 OPN1SWP03999 348 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 SLC6A2P23975 617 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 MAGEB1P43366 347 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 FXNQ16595 210 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 LRIF1Q5T3J3 769 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 NHLRC1Q6VVB1 395 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 C12orf54Q6X4T0 127 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 WDR88Q6ZMY6 472 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 CROCCP2Q86T23 111 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 MEX3DQ86XN8 651 aaKnown RBP10.84□□□□□ -0.67
SKA1-205ENST00000494518 ARMC8Q8IUR7 673 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 ZNF584Q8IVC4 421 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 PAQR4Q8N4S7 273 aaPredicted RBP10.84□□□□□ -0.67
SKA1-205ENST00000494518 RDH5Q92781 318 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 TMEM186Q96B77 213 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 LRR1Q96L50 414 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 LRRC37BQ96QE4 947 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 TSPAN32Q96QS1 320 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 SH3GL3Q99963 347 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 EBF4Q9BQW3 602 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 MS4A5Q9H3V2 200 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 TCF7L2Q9NQB0 619 aa10.84□□□□□ -0.67
SKA1-205ENST00000494518 CPSF4LA6NMK7 179 aaKnown RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 UBL3O95164 117 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 OR6A2O95222 327 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 ACHEP22303 614 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 EVX1P49640 407 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 ERVS71-1P61550 626 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 RPS23P62266 143 aaKnown RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 NKPD1Q17RQ9 610 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 AGKQ53H12 422 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 AVPI1Q5T686 147 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 SHQ1Q6PI26 577 aaKnown RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 BLOC1S3Q6QNY0 202 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 ZNF771Q7L3S4 317 aaPredicted RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 ZNF627Q7L945 461 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 RANBP3LQ86VV4 465 aaPredicted RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 ICA1LQ8NDH6 482 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 OR5J2Q8NH18 312 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 OR6S1Q8NH40 331 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 VANGL1Q8TAA9 524 aaPredicted RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 GTF3AQ92664 365 aaKnown RBP10.83□□□□□ -0.68
SKA1-205ENST00000494518 ZNF607Q96SK3 696 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 MCHR1Q99705 422 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 SLCO1B3Q9NPD5 702 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 TAAR3PQ9P1P4 343 aa10.83□□□□□ -0.68
SKA1-205ENST00000494518 TRBV5-3A0A0A0MS03 114 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 PRORSD1PA6NEY8 169 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RNF13O43567 381 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 ZNF500O60304 480 aaPredicted RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 CH25HO95992 272 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 MSMBP08118 114 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 GAAP10253 952 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 PCMT1P22061 227 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 PPIBP23284 216 aaKnown RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 CFPP27918 469 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 LSP1P33241 339 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 IDH3AP50213 366 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 MYBPC1Q00872 1141 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 MVKQ03426 396 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 GLO1Q04760 184 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RUNX1T1Q06455 604 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 NPTX1Q15818 432 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RGS7BPQ6MZT1 257 aaPredicted RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 FAHD2BQ6P2I3 314 aaPredicted RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 DEF8Q6ZN54 512 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SLC35D2Q76EJ3 337 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 PXKQ7Z7A4 578 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SNX32Q86XE0 403 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RBM45Q8IUH3 476 aaKnown RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 SLC22A24Q8N4F4 322 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 LRRC17Q8N6Y2 441 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 HIPK4Q8NE63 616 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SLC30A7Q8NEW0 376 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SEMA6DQ8NFY4 1073 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 TMEM54Q969K7 222 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 TLCD1Q96CP7 247 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 FAHD2AQ96GK7 314 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 ARHGDIGQ99819 225 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 CPPED1Q9BRF8 314 aaPredicted RBP10.82□□□□□ -0.68
SKA1-205ENST00000494518 TMEM43Q9BTV4 400 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 PLA2G12AQ9BZM1 189 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RACGAP1Q9H0H5 632 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 RNF121Q9H920 327 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 TMBIM4Q9HC24 238 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SLC52A3Q9NQ40 469 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 GLTPQ9NZD2 209 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 SLC7A8Q9UHI5 535 aa10.82□□□□□ -0.68
SKA1-205ENST00000494518 ANGPT4Q9Y264 503 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms