RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NUDCD3Q8IVD9 361 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 ULBP2Q9BZM5 246 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 TCF7L2Q9NQB0 619 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 POFUT2Q9Y2G5 429 aa13.03□□□□□ -0.32
MCF2L-228ENST00000487354 A0A0G2JPF8 293 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 WDR91A4D1P6 747 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 HNRNPCL2B2RXH8 293 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 HNRNPCL3B7ZW38 293 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 RFXANKO14593 260 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 HNRNPCL1O60812 293 aaKnown RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 HNRNPCL4P0DMR1 293 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 GATA3P23771 443 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 CRATP43155 626 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 KLF3P57682 345 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 PCGF3Q3KNV8 242 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 C5orf46Q6UWT4 87 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 ZNF771Q7L3S4 317 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 BCL6BQ8N143 479 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 SCAIQ8N9R8 606 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 SLC30A7Q8NEW0 376 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 BHLHE22Q8NFJ8 381 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 OR6S1Q8NH40 331 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 MGARPQ8TDB4 240 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 TMEM54Q969K7 222 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 MAL2Q969L2 176 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 OR51B6Q9H340 312 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 TPT1P8Q9HAU6 139 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 BCL2L10Q9HD36 194 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 PNPOQ9NVS9 261 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 ZNF69Q9UC07 566 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 LEF1Q9UJU2 399 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 FBXL3Q9UKT7 428 aa13.02□□□□□ -0.33
MCF2L-228ENST00000487354 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.02□□□□□ -0.33
MCF2L-228ENST00000487354 CLDN25C9JDP6 229 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 ZCCHC18P0CG32 403 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 HOXB9P17482 250 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-228ENST00000487354 MAKP20794 623 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 RBMXP38159 391 aaKnown RBP13.01□□□□□ -0.33
MCF2L-228ENST00000487354 LCN2P80188 198 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 PUDPQ08623 228 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 LRRC74AQ0VAA2 488 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 SPRNQ5BIV9 151 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 TMEM154Q6P9G4 183 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 NET1Q7Z628 596 aaPredicted RBP13.01□□□□□ -0.33
MCF2L-228ENST00000487354 SYNPRQ8TBG9 265 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 WFDC6Q9BQY6 131 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 B3GAT2Q9NPZ5 323 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 MMP26Q9NRE1 261 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 MRPL39Q9NYK5 338 aaKnown RBP13.01□□□□□ -0.33
MCF2L-228ENST00000487354 IFT52Q9Y366 437 aa13.01□□□□□ -0.33
MCF2L-228ENST00000487354 PLPP3O14495 311 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 TPST2O60704 377 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 MFN2O95140 757 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 SNAP29O95721 258 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 RNASE1P07998 156 aaKnown RBP13□□□□□ -0.33
MCF2L-228ENST00000487354 BMP2P12643 396 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 NQO1P15559 274 aaKnown RBP13□□□□□ -0.33
MCF2L-228ENST00000487354 FPR2P25090 351 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 SLC1A6P48664 564 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 GLO1Q04760 184 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 TSTQ16762 297 aaKnown RBP13□□□□□ -0.33
MCF2L-228ENST00000487354 ALG10BQ5I7T1 473 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 LRFN4Q6PJG9 635 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 PIWIL3Q7Z3Z3 882 aaKnown RBP13□□□□□ -0.33
MCF2L-228ENST00000487354 C10orf111Q8N326 155 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 SLC22A24Q8N4F4 322 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 OR6N1Q8NGY5 312 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 ZNF519Q8TB69 540 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 SH3GL3Q99963 347 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 SAP30LQ9HAJ7 183 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 A4GALTQ9NPC4 353 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 TMEM38BQ9NVV0 291 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 DCAF16Q9NXF7 216 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 ZNF232Q9UNY5 417 aa13□□□□□ -0.33
MCF2L-228ENST00000487354 PPIAL4EA0A075B759 164 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 PPIAL4CA0A0B4J2A2 164 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 A0A0B4J2E0 115 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 A0A1B0GX12 115 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 PPIAL4DF5H284 164 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 TPST1O60507 370 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 UBOX5O94941 541 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 IGHV1-46P01743 117 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 IGHV3-13P01766 116 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 PPIAL4FP0DN26 164 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 PRKAR1BP31321 381 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 RAD52P43351 418 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 CSNK1A1P48729 337 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 MMP15P51511 669 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 BIDP55957 195 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 RBBP4Q09028 425 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 OCLNQ16625 522 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 FAM91A1Q658Y4 838 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 PXKQ7Z7A4 578 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 SNX33Q8WV41 574 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 DNAJA4Q8WW22 397 aaPredicted RBP12.99□□□□□ -0.33
MCF2L-228ENST00000487354 GAL3ST1Q99999 423 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 SLITRK2Q9H156 845 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 ARMC7Q9H6L4 198 aa12.99□□□□□ -0.33
MCF2L-228ENST00000487354 ZMAT3Q9HA38 289 aaKnown RBP12.99□□□□□ -0.33
MCF2L-228ENST00000487354 SLCO1C1Q9NYB5 712 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms