RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF74Q16587 644 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 HIST3H3Q16695 136 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CR1LQ2VPA4 569 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RANBP3LQ86VV4 465 aaPredicted RBP10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RBM45Q8IUH3 476 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SKA3Q8IX90 412 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 C11orf65Q8NCR3 313 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TSPEARQ8WU66 669 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 C19orf24Q9BVV8 132 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 B3GAT2Q9NPZ5 323 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 INTS9Q9NV88 658 aaKnown RBP10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GLTPQ9NZD2 209 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SELENONQ9NZV5 590 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 POFUT2Q9Y2G5 429 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF726A6NNF4 738 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SERPINA5P05154 406 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TSPAN19P0C672 248 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CD79AP11912 226 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 COL8A2P25067 703 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CAPZA2P47755 286 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 BIDP55957 195 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NCALDP61601 193 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SRSF2Q01130 221 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 IL1RL1Q01638 556 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HSP90B2PQ58FF3 399 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ENTPD8Q5MY95 495 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC35D2Q76EJ3 337 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CCDC80Q76M96 950 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LRP11Q86VZ4 500 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SNX32Q86XE0 403 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LINC01356Q8N9X3 169 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ADAMTS16Q8TE57 1224 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SEPHS2Q99611 448 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PRSS27Q9BQR3 290 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MRPL13Q9BYD1 178 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ULBP2Q9BZM5 246 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MS4A5Q9H3V2 200 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RABEP2Q9H5N1 569 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MYEF2Q9P2K5 600 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 REV1Q9UBZ9 1251 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LEF1Q9UJU2 399 aaPredicted RBP10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ANGPT4Q9Y264 503 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TENM1Q9UKZ4 2725 aa10.52□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 M0R233 179 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SASH3O75995 380 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 UBL3O95164 117 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HPXP02790 462 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ERCC1P07992 297 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PATE4P0C8F1 98 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PGA4P0DJD7 388 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PGA3P0DJD8 388 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ADORA3P0DMS8 318 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 HNF1AP20823 631 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 AHCYP23526 432 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PTDSS1P48651 473 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CSNK1A1P48729 337 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF133P52736 654 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SEC24CP53992 1094 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MRPS11P82912 194 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 RAB39AQ14964 217 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TRMT5Q32P41 509 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NRN1LQ496H8 165 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DEF8Q6ZN54 512 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DHDDSQ86SQ9 333 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CARM1Q86X55 608 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC22A24Q8N4F4 322 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 LRRC17Q8N6Y2 441 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OR6N1Q8NGY5 312 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TAMM41Q96BW9 452 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC25A44Q96H78 314 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MPP4Q96JB8 637 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC19A3Q9BZV2 496 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MEPEQ9NQ76 525 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TMEM38BQ9NVV0 291 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TMEFF2Q9UIK5 374 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF229Q9UJW7 825 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC13A4Q9UKG4 626 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 FBXL3Q9UKT7 428 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 NDUFAF1Q9Y375 327 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SPEF1Q9Y4P9 236 aa10.51□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 IGLV3-9A0A075B6K5 115 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TRAPPC13A5PLN9 417 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 C11orf98E9PRG8 122 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ATP8B1O43520 1251 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CH25HO95992 272 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 IGF2P01344 180 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OPN1SWP03999 348 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 OR8G3PP0DMU2 310 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ZNF250P15622 560 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 APEX1P27695 318 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PCGF2P35227 344 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 ALDH3B1P43353 468 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 DVL1P1P54792 670 aaPredicted RBP10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 TMEM33P57088 247 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 MTPNP58546 118 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 UGT2A3Q6UWM9 527 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 PATL1Q86TB9 770 aaKnown RBP10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 CALHM3Q86XJ0 350 aa10.5□□□□□ -0.73
MSH5-SAPCD1-205ENST00000476085 SLC30A8Q8IWU4 369 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms