RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 A6NDX4 124 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 FAM47DPA6NHR8 397 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF716A6NP11 495 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 FAM166BA8MTA8 275 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 AP3B1O00203 1094 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 SERPIND1P05546 499 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 C2P06681 752 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF735P0CB33 412 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 GKN3PP0CG01 181 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 IGKV1-13P0DP09 117 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 IFNA8P32881 189 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC26A3P40879 764 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 CSNK1DP48730 415 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 PPOXP50336 477 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 CRISP3P54108 245 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 LINC00315P59091 139 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 PFN3P60673 137 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 AQP6Q13520 282 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 PSG5Q15238 335 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ASCL5Q7RTU5 278 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 LHFPL3Q86UP9 236 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF429Q86V71 674 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF561Q8N587 486 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 Q8N9W7 124 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 OR56B2PQ8NGI1 322 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 OR1N2Q8NGR9 330 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 OR2G3Q8NGZ4 309 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 OR6X1Q8NH79 312 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 PLPPR1Q8TBJ4 325 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC22A8Q8TCC7 542 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 MCOLN3Q8TDD5 553 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 BLOC1S5Q8TDH9 187 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM158Q8WZ71 300 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 STMN2Q93045 179 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 SGK3Q96BR1 496 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 LRRC58Q96CX6 371 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 RNF185Q96GF1 192 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 SH3GL1Q99961 368 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 RARRES2Q99969 163 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 TM9SF3Q9HD45 589 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF331Q9NQX6 463 aaPredicted RBP1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 NMRK1Q9NWW6 199 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 CRCT1Q9UGL9 99 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 CTNNA3Q9UI47 895 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 PACSIN2Q9UNF0 486 aaPredicted RBP1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 HEBP2Q9Y5Z4 205 aa1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.85□□□□□ -2.11
CCDC88A-212ENST00000474059 TRBV6-6A0A0A6YYG2 114 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A1B0GVI7 797 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 HEATR9A2RTY3 570 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GOLGA8OA6NCC3 632 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 NKX2-6A6NCS4 301 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF726A6NNF4 738 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CCDC169A6NNP5 214 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GOLGA8NF8WBI6 632 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GOSR2O14653 212 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 WISP3O95389 354 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 PCCAP05165 728 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CRYGBP07316 175 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CSF3P09919 207 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 TOP1P11387 765 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CHMLP26374 656 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GDI1P31150 447 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 RORAP35398 523 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 TFPI2P48307 235 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CCR6P51684 374 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 SUCLG1P53597 346 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 SUB1P53999 127 aaKnown RBP eCLIP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 FGF8P55075 233 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GPX6P59796 221 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 MRPS22P82650 360 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 ARHGAP19Q14CB8 494 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 TGFBIQ15582 683 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 SGCAQ16586 387 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GUCA2BQ16661 112 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 RFX4Q33E94 735 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 CYB5R2Q6BCY4 276 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM107Q6UX40 140 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF836Q6ZNA1 936 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 NIPA1Q7RTP0 329 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 ARIH2OSQ8N7S6 290 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 HSD17B11Q8NBQ5 300 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 MDS2Q8NDY4 140 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 SDR42E1Q8WUS8 393 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 IL22RA2Q969J5 263 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 RASD2Q96D21 266 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 KCTD14Q9BQ13 255 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 HDHD3Q9BSH5 251 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 KRTAP4-1Q9BYQ7 146 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 GPR61Q9BZJ8 451 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 DNTTIP1Q9H147 329 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 UGT1A7Q9HAW7 530 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 UGT1A10Q9HAW8 530 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 UGT1A8Q9HAW9 530 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 INPP5EQ9NRR6 644 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 PSMC3IPQ9P2W1 217 aaPredicted RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 DEC1Q9P2X7 70 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 NUFIP1Q9UHK0 495 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 STARD10Q9Y365 291 aa1.84□□□□□ -2.11
CCDC88A-212ENST00000474059 F11RQ9Y624 299 aaKnown RBP1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms