RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	CARTPT	Q16568	116 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	GSG1	Q2KHT4	349 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	PHYHD1	Q5SRE7	291 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CLEC2A	Q6UVW9	174 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	HACD2	Q6Y1H2	254 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	B3GLCT	Q6Y288	498 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF730	Q6ZMV8	503 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	SLC46A3	Q7Z3Q1	461 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	MDP1	Q86V88	176 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	RNF148	Q8N7C7	305 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	MAGEE2	Q8TD90	523 aa	Predicted RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	HSH2D	Q96JZ2	352 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	LRRC37B	Q96QE4	947 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	VRK1	Q99986	396 aa	Predicted RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	RHNO1	Q9BSD3	238 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	KATNB1	Q9BVA0	655 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	KCNN2	Q9H2S1	579 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	GLTP	Q9NZD2	209 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	GMPR2	Q9P2T1	348 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	STX18	Q9P2W9	335 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	GDF2	Q9UK05	429 aa	Predicted RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	ARL2BP	Q9Y2Y0	163 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373		V9GYQ6	96 aa		10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	FLNA	P21333	2647 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CHD3	Q12873	2000 aa	Known RBP	10.05	□□□□□ -0.8
CPNE1-222	ENST00000473373	CR1	P17927	2039 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373		J3KTA2	159 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	PIP5K1C	O60331	668 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	FZD7	O75084	574 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	UBL3	O95164	117 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	TP53	P04637	393 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	ERCC1	P07992	297 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	ASAH2B	P0C7U1	165 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	NR2C1	P13056	603 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	CBR1	P16152	277 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	AQP2	P41181	271 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	GUCA1A	P43080	201 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	PPP2R2B	Q00005	443 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	MYBPC1	Q00872	1141 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	NAAA	Q02083	359 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZP4	Q12836	540 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	FGD3	Q5JSP0	725 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	GKAP1	Q5VSY0	366 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	GLYAT	Q6IB77	296 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	DTX2	Q86UW9	622 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	TSPYL5	Q86VY4	417 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	KRTAP1-3	Q8IUG1	177 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	SYT14	Q8NB59	555 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	OR4F15	Q8NGB8	312 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	OR6X1	Q8NH79	312 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	HTRA1	Q92743	480 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	BPIFA2	Q96DR5	249 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	ZNF837	Q96EG3	531 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	SLC25A44	Q96H78	314 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	MDFI	Q99750	246 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	PRSS27	Q9BQR3	290 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	KRCC1	Q9NPI7	259 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	MEPE	Q9NQ76	525 aa	Predicted RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	NDE1	Q9NXR1	346 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	TAS2R5	Q9NYW4	299 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	SAMD4A	Q9UPU9	718 aa	Known RBP	10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	SPEF1	Q9Y4P9	236 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	FKBP7	Q9Y680	259 aa		10.04	□□□□□ -0.8
CPNE1-222	ENST00000473373	EFCAB9	A8MZ26	197 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	RNF223	E7ERA6	249 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	OVOL3	O00110	214 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	NDUFS7	O75251	213 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	LYPD3	O95274	346 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	HLA-H	P01893	362 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	CELA3B	P08861	270 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	QDPR	P09417	244 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	OR8G3P	P0DMU2	310 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	PAX1	P15863	534 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	RPL4	P36578	427 aa	Known RBP	10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	SNTB2	Q13425	540 aa	Known RBP	10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	TNK1	Q13470	666 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	ALG10	Q5BKT4	473 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	KRT80	Q6KB66	452 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	TMEM53	Q6P2H8	277 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	C16orf89	Q6UX73	402 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	CBLL1	Q75N03	491 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	OAF	Q86UD1	273 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	NRM	Q8IXM6	262 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	OFCC1	Q8IZS5	231 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	CIART	Q8N365	385 aa	Predicted RBP	10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	NOXO1	Q8NFA2	376 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	IL17RD	Q8NFM7	739 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	MCUR1	Q96AQ8	359 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	MYLK2	Q9H1R3	596 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	NELFA	Q9H3P2	528 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	DYNLRB1	Q9NP97	96 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	CA10	Q9NS85	328 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	C20orf141	Q9NUB4	165 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	TAGLN3	Q9UI15	199 aa		10.03	□□□□□ -0.8
CPNE1-222	ENST00000473373	TRAV27	A0A087WT01	109 aa		10.02	□□□□□ -0.81
CPNE1-222	ENST00000473373	SH3PXD2B	A1X283	911 aa		10.02	□□□□□ -0.81
CPNE1-222	ENST00000473373	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.02	□□□□□ -0.81
CPNE1-222	ENST00000473373	DYNC1I1	O14576	645 aa		10.02	□□□□□ -0.81
CPNE1-222	ENST00000473373	DHH	O43323	396 aa		10.02	□□□□□ -0.81
CPNE1-222	ENST00000473373	CD8A	P01732	235 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms