RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ZNF217O75362 1048 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 PIP5KL1Q5T9C9 394 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SFT2D1Q8WV19 159 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 GINS3Q9BRX5 216 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 RARRES3Q9UL19 164 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 TRAF3IP2O43734 574 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 AQP8O94778 261 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SDHBP21912 280 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 RPS26P11Q5JNZ5 115 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 CORO6Q6QEF8 472 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 Q6ZTK2 550 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 WRAP73Q9P2S5 460 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 LRP6O75581 1613 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 CADP27708 2225 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 PDGFBP01127 241 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ALG12Q9BV10 488 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SLC25A18Q9H1K4 315 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 GCSHP23434 173 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 HIST1H3AP68431 136 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 CPNE8Q86YQ8 564 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 CISD2Q8N5K1 135 aaKnown RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 OR4F15Q8NGB8 312 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 VAMP8Q9BV40 100 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SLC2A9Q9NRM0 540 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 TM7SF3Q9NS93 570 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 MARCH4Q9P2E8 410 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 EDN1P05305 212 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ACSM4P0C7M7 580 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 CSN1S1P47710 185 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 PTTG1IPP53801 180 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SLC10A2Q12908 348 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-209ENST00000472056 SLC36A2Q495M3 483 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 OR2G3Q8NGZ4 309 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 GABARAPL3Q9BY60 117 aa12.35□□□□□ -0.43
COL6A3-209ENST00000472056 ANKUB1A6NFN9 424 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 CLDN1O95832 211 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 JMJD7P0C870 316 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 KCNJ3P48549 501 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 MTCP1P56278 107 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 IAH1Q2TAA2 248 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 TXNDC8Q6A555 127 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF852Q6ZMS4 543 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ASB11Q8WXH4 323 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 FBXL2Q9UKC9 423 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 TNRC6CQ9HCJ0 1690 aaKnown RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM235A6NFC5 223 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 GABRR3A8MPY1 467 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF264O43296 627 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SOX15O60248 233 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SLC35A1P78382 337 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 BAXQ07812 192 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 PTBP3O95758 552 aaKnown RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 EIF4EP06730 217 aaKnown RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 CFHP08603 1231 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 CPMP14384 443 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ACKR3P25106 362 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 HOXA1P49639 335 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 KCTD11Q693B1 232 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 OR52W1Q6IF63 320 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SLC35D2Q76EJ3 337 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 OR52I1Q8NGK6 324 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 EMG1Q92979 244 aaKnown RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 EPHX3Q9H6B9 360 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SFXN1Q9H9B4 322 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 PRLHRP49683 370 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SCAND1P57086 179 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 EGR3Q06889 387 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM71Q6P5X7 295 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 NECTIN4Q96NY8 510 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 RIMS4Q9H426 269 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 FBP1P09467 338 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 HSF1Q00613 529 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 LMAN2Q12907 356 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 PSAPL1Q6NUJ1 521 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 MMP21Q8N119 569 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 PGBD5Q8N414 524 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 MSLNLQ96KJ4 702 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 GAB2Q9UQC2 676 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 G3V3Q6 166 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SERPINA2P20848 420 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 MPPED2Q15777 294 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 LY6G5CQ5SRR4 150 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ESPNLQ6ZVH7 1005 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF551Q7Z340 670 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 FUNDC1Q8IVP5 155 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 SDR9C7Q8NEX9 313 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 LMX1AQ8TE12 382 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 CPPED1Q9BRF8 314 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-209ENST00000472056 ABCA7Q8IZY2 2146 aa12.34□□□□□ -0.43
COL6A3-209ENST00000472056 TM4SF1P30408 202 aa12.33□□□□□ -0.43
COL6A3-209ENST00000472056 NPSR1Q6W5P4 371 aa12.33□□□□□ -0.43
COL6A3-209ENST00000472056 OR8U1Q8NH10 309 aa12.33□□□□□ -0.43
COL6A3-209ENST00000472056 TVP23CQ96ET8 276 aa12.33□□□□□ -0.43
COL6A3-209ENST00000472056 TCTN2Q96GX1 697 aa12.33□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF840PA6NDX5 716 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 OLIG2Q13516 323 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ALKBH1Q13686 389 aaKnown RBP12.33□□□□□ -0.44
COL6A3-209ENST00000472056 TAZQ16635 292 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 CLLU1Q5K131 121 aa12.33□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF596Q8TC21 504 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms