RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SLC25A27	O95847	323 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	IGLV2-23	P01705	113 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	ZDHHC11B	P0C7U3	371 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	OMG	P23515	440 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	PBLD	P30039	288 aa	Predicted RBP	2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	RORA	P35398	523 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	CCR8	P51685	355 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	HMGN5	P82970	282 aa	Known RBP	2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	LRRC74A	Q0VAA2	488 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	AQP6	Q13520	282 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	GUCA2B	Q16661	112 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	AGBL2	Q5U5Z8	902 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	CNIH2	Q6PI25	160 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	LYPD2	Q6UXB3	125 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	SLC22A9	Q8IVM8	553 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	ENTHD1	Q8IYW4	607 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	PUSL1	Q8N0Z8	303 aa	Known RBP	2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	DUSP18	Q8NEJ0	188 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	PLPPR1	Q8TBJ4	325 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	PIBF1	Q8WXW3	757 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	SGK3	Q96BR1	496 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	TCHP	Q9BT92	498 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	OSBPL10	Q9BXB5	764 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	GPR61	Q9BZJ8	451 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	DNTTIP1	Q9H147	329 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	UGT1A7	Q9HAW7	530 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	UGT1A10	Q9HAW8	530 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	UGT1A8	Q9HAW9	530 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	RBAK	Q9NYW8	714 aa	Predicted RBP	2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	PISD	Q9UG56	409 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	CSDC2	Q9Y534	153 aa	Known RBP	2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	HEBP2	Q9Y5Z4	205 aa		2.42	□□□□□ -2.02
PTCD3-209	ENST00000472044	CEMIP	Q8WUJ3	1361 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TRAV39	A0A0B4J263	110 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044		A0A0B4J2A0	478 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	PLAC8L1	A1L4L8	177 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	DLGAP1	O14490	977 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	DYNC1I1	O14576	645 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	ICOSLG	O75144	302 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	SERPIND1	P05546	499 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	ZNF43	P17038	809 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	HOXA9	P31269	272 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	CCR6	P51684	374 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	SUCLG1	P53597	346 aa	Known RBP	2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	GPX6	P59796	221 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	HERVK_113	P61574	105 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	MRPS22	P82650	360 aa	Known RBP	2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	ZNF92	Q03936	586 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	REG3A	Q06141	175 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TMEM183B	Q1AE95	376 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TMEM107	Q6UX40	140 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	FAM228A	Q86W67	206 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TMEM183A	Q8IXX5	376 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	ZNF786	Q8N393	782 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	CCDC54	Q8NEL0	328 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	SPATA4	Q8NEY3	305 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	AKR7L	Q8NHP1	331 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	KCNG3	Q8TAE7	436 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	MARCH1	Q8TCQ1	289 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	CD300LF	Q8TDQ1	290 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	GPR151	Q8TDV0	419 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TMEM158	Q8WZ71	300 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	N4BP2L2	Q92802	583 aa	Predicted RBP	2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	TMEM54	Q969K7	222 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	MED8	Q96G25	268 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	RARRES2	Q99969	163 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	ILKAP	Q9H0C8	392 aa	Predicted RBP	2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	LINC00597	Q9H2U6	94 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	DEC1	Q9P2X7	70 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	PCYOX1	Q9UHG3	505 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	SHPK	Q9UHJ6	478 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	F11R	Q9Y624	299 aa	Known RBP	2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	OBSCN	Q5VST9	7968 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	MAP3K15	Q6ZN16	1313 aa		2.41	□□□□□ -2.02
PTCD3-209	ENST00000472044	IGLV11-55	A0A075B6I3	123 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044		A0A096LNJ9	63 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	ZNF716	A6NP11	495 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	GOSR2	O14653	212 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	MRPS12	O15235	138 aa	Known RBP	2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	SUPT3H	O75486	399 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	C6orf47	O95873	294 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	BGLAP	P02818	100 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	UQCRFS1P1	P0C7P4	283 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	ZNF735	P0CB33	412 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	RPS21	P63220	83 aa	Known RBP	2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	HMGCS1	Q01581	520 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	SMARCB1	Q12824	385 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	IDI1	Q13907	227 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	RSPO1	Q2MKA7	263 aa	Predicted RBP	2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	TSPO2	Q5TGU0	170 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	RNASEK	Q6P5S7	137 aa	Known RBP	2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	ZYG11A	Q6WRX3	759 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	LINC01551	Q86U37	167 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	CDH26	Q8IXH8	852 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	CEP112	Q8N8E3	955 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	SLC22A8	Q8TCC7	542 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	ACTRT1	Q8TDG2	376 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	SDR42E1	Q8WUS8	393 aa		2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	EXOSC8	Q96B26	276 aa	Known RBP	2.4	□□□□□ -2.03
PTCD3-209	ENST00000472044	RASD2	Q96D21	266 aa		2.4	□□□□□ -2.03

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