RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 POLR2IP36954 125 aaKnown RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ASCL1P50553 236 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 MYBPC1Q00872 1141 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 FAPQ12884 760 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 DAG1Q14118 895 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 TRIP10Q15642 601 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 TSC22D1Q15714 1073 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 C9orf135Q5VTT2 229 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 FBXW9Q5XUX1 488 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 PTCHD4Q6ZW05 846 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 C20orf196Q8IYI0 205 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 GABRG1Q8N1C3 465 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 UBE2J2Q8N2K1 259 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ARIH2OSQ8N7S6 290 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 SYT14Q8NB59 555 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 MAGEE2Q8TD90 523 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 TMEM54Q969K7 222 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 SLC25A44Q96H78 314 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ADAD1Q96M93 576 aaKnown RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ZNF570Q96NI8 536 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ERMAPQ96PL5 475 aaPredicted RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 KCNK17Q96T54 332 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 RBM24Q9BX46 236 aaKnown RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 MRPL13Q9BYD1 178 aaKnown RBP13.04□□□□□ -0.32
COL9A3-209ENST00000469852 RNPEPL1Q9HAU8 725 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 KRT84Q9NSB2 600 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 GALNT8Q9NY28 637 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 MALT1Q9UDY8 824 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 POFUT2Q9Y2G5 429 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 ADGRG4Q8IZF6 3080 aa13.04□□□□□ -0.32
COL9A3-209ENST00000469852 IGKV1D-43A0A0B4J1Z2 117 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 M0R3G1 203 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 AKAP8O43823 692 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 TXNDC12O95881 172 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 ITGA5P08648 1049 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 ACADSP16219 412 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 IGHV1-2P23083 117 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 SDHAP31040 664 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 CCKARP32238 428 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 FMODQ06828 376 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 FAM27E3Q08E93 113 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 KRR1Q13601 381 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 SNTB1Q13884 538 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 LRRC36Q1X8D7 754 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 FBXL19-AS1Q494R0 122 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 SLC35F1Q5T1Q4 408 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 TMEM236Q5W0B7 351 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 ACSM5Q6NUN0 579 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 RPL13AP3Q6NVV1 102 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 Q6ZT83 130 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 CXorf67Q86X51 503 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 PARP8Q8N3A8 854 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 NOXO1Q8NFA2 376 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 OR52L1Q8NGH7 329 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 EME1Q96AY2 570 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 NMD3Q96D46 503 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 RBM4BQ9BQ04 359 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 C9orf16Q9BUW7 83 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 RBM4Q9BWF3 364 aaKnown RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 LINC00470Q9BZP3 86 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 KCNJ16Q9NPI9 418 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 NPDC1Q9NQX5 325 aaPredicted RBP13.03□□□□□ -0.32
COL9A3-209ENST00000469852 USE1Q9NZ43 259 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 GRHPRQ9UBQ7 328 aa13.03□□□□□ -0.32
COL9A3-209ENST00000469852 SPTAN1Q13813 2472 aaKnown RBP13.02□□□□□ -0.32
COL9A3-209ENST00000469852 CASQ2O14958 399 aaPredicted RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ARPC3O15145 178 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ARHGEF9O43307 516 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 SLC2A10O95528 541 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 CLDN1O95832 211 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 IGHG1P01857 330 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 APEHP13798 732 aaKnown RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 HIST1H1CP16403 213 aaKnown RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 CDKN2AP42771 156 aaKnown RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 CSNK1A1P48729 337 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ALDH3A2P51648 485 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 RPS6KA3P51812 740 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 CRISP1P54107 249 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ROR2Q01974 943 aaKnown RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 GINS1Q14691 196 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 TAF11Q15544 211 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 HIST3H3Q16695 136 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 PGGHGQ32M88 737 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ZNF362Q5T0B9 420 aaPredicted RBP13.02□□□□□ -0.33
COL9A3-209ENST00000469852 HIST2H2BCQ6DN03 193 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 LRFN4Q6PJG9 635 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 STAC2Q6ZMT1 411 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ZBTB49Q6ZSB9 765 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 BEND4Q6ZU67 534 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 LNX2Q8N448 690 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 OR6N1Q8NGY5 312 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 OR4K13Q8NH42 304 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 TEX47Q8TBZ9 253 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 NRG4Q8WWG1 115 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 DNAJC9Q8WXX5 260 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 ZNF566Q969W8 418 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 LRR1Q96L50 414 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 NDEL1Q9GZM8 345 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 GPR35Q9HC97 309 aa13.02□□□□□ -0.33
COL9A3-209ENST00000469852 GLTPQ9NZD2 209 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms