RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 GLTPQ9NZD2 209 aa17.82■□□□□ 0.44
SKA3-205ENST00000465471 PDZD2O15018 2839 aa17.82■□□□□ 0.44
SKA3-205ENST00000465471 POLQO75417 2590 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.81■□□□□ 0.44
SKA3-205ENST00000465471 UNC119BA6NIH7 251 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 MCIDASD6RGH6 385 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 OR10H3O60404 316 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 IGHG1P01857 330 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 ZNF133P52736 654 aaPredicted RBP17.81■□□□□ 0.44
SKA3-205ENST00000465471 CTXN1P60606 82 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 NOXO1Q8NFA2 376 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 OR6N1Q8NGY5 312 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 ZNF519Q8TB69 540 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 NMD3Q96D46 503 aaKnown RBP17.81■□□□□ 0.44
SKA3-205ENST00000465471 LURAP1Q96LR2 239 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 TSPAN32Q96QS1 320 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 ULBP2Q9BZM5 246 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 REEP1Q9H902 201 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 B3GAT2Q9NPZ5 323 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 NPAP1Q9NZP6 1156 aa17.81■□□□□ 0.44
SKA3-205ENST00000465471 STX18Q9P2W9 335 aaKnown RBP17.81■□□□□ 0.44
SKA3-205ENST00000465471 ZNF99A8MXY4 864 aaPredicted RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 FKBP6O75344 327 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 TRMUO75648 421 aaKnown RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 NDUFB2O95178 105 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 ACADSP16219 412 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 IFNGR2P38484 337 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 RPL27P61353 136 aaKnown RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 ARF1P84077 181 aaKnown RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 TBRG1Q3YBR2 411 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 HIKESHIQ53FT3 197 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 FAM205BPQ63HN1 556 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 ANKRD16Q6P6B7 361 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 LRFN4Q6PJG9 635 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 THSD4Q6ZMP0 1018 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 FAM122BQ7Z309 247 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 IGFN1Q86VF2 1251 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 CDC20BQ86Y33 519 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 OR9Q2Q8NGE9 314 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 MUCL1Q96DR8 90 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 HS3ST6Q96QI5 342 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 KCNK17Q96T54 332 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 TMEM204Q9BSN7 226 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 POLDIP3Q9BY77 421 aaKnown RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 OBP2BQ9NPH6 170 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 AMDHD2Q9Y303 409 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 SAMHD1Q9Y3Z3 626 aaKnown RBP17.8■□□□□ 0.44
SKA3-205ENST00000465471 MAST4O15021 2626 aa17.8■□□□□ 0.44
SKA3-205ENST00000465471 ARPC4-TTLL3A0A0A6YYG9 625 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 CST1P01037 141 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 CD14P08571 375 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 HOXB1P14653 301 aaPredicted RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 CDH2P19022 906 aaPredicted RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 NR1H2P55055 460 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 PPP1R8Q12972 351 aaKnown RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 TSPAN31Q12999 210 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 CCNIQ14094 377 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 C1orf146Q5VVC0 180 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 OR52N5Q8NH56 324 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 HDAC2Q92769 488 aaKnown RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 PIK3IP1Q96FE7 263 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 DUS3LQ96G46 650 aaKnown RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 KATNB1Q9BVA0 655 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 NGBQ9NPG2 151 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 NRIP3Q9NQ35 241 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 ZNF346Q9UL40 294 aaKnown RBP17.79■□□□□ 0.44
SKA3-205ENST00000465471 NAV2Q8IVL1 2488 aa17.79■□□□□ 0.44
SKA3-205ENST00000465471 RAI1Q7Z5J4 1906 aaPredicted RBP17.78■□□□□ 0.44
SKA3-205ENST00000465471 SPG11Q96JI7 2443 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 A0A1W2PR80 420 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 CCNB2O95067 398 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 ERFP50548 548 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 TOP3AQ13472 1001 aaPredicted RBP17.78■□□□□ 0.44
SKA3-205ENST00000465471 MICAQ29983 383 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 NCMAPQ5T1S8 102 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 SMARCD3Q6STE5 483 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 GNPDA2Q8TDQ7 276 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 PLPPR2Q96GM1 343 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 ALG12Q9BV10 488 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 NDEL1Q9GZM8 345 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 YY1AP1Q9H869 796 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 PLEKHF2Q9H8W4 249 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 ADAM18Q9Y3Q7 739 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 U3KQV3 271 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 TEX15Q9BXT5 2789 aa17.78■□□□□ 0.44
SKA3-205ENST00000465471 ARRDC5A6NEK1 342 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 HOXC12P31275 282 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 ACVR1BP36896 505 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 CLRN1P58418 232 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 ERVK-25P63136 954 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 C10orf128Q5T292 105 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 ZNF620Q6ZNG0 422 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 ARIH2OSQ8N7S6 290 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 FANK1Q8TC84 345 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 MCHR2Q969V1 340 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 FOXB1Q99853 325 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 DGCR6LQ9BY27 220 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 OR52D1Q9H346 318 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 SMURF2Q9HAU4 748 aa17.77■□□□□ 0.44
SKA3-205ENST00000465471 MAGED1Q9Y5V3 778 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms