RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 SAMHD1Q9Y3Z3 626 aaKnown RBP12.73□□□□□ -0.37
SQSTM1-205ENST00000464493 SLC25A15Q9Y619 301 aa12.73□□□□□ -0.37
SQSTM1-205ENST00000464493 LRBAP50851 2863 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 A0A096LPE4 126 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 A0A1W2PPZ6 126 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 A0A1W2PR80 420 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 ZNF99A8MXY4 864 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CENPBD1B2RD01 187 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 TRMUO75648 421 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CCNB2O95067 398 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 NDUFB2O95178 105 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CST1P01037 141 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 IGHMP01871 453 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 ZNF26P17031 533 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 FPR3P25089 353 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 RPL4P36578 427 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 NR1H2P55055 460 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 RPL27P61353 136 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 RUNX1T1Q06455 604 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 PPP1R8Q12972 351 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 TOP3AQ13472 1001 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 TBRG1Q3YBR2 411 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 HIKESHIQ53FT3 197 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 C1QTNF12Q5T7M4 302 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 LRFN4Q6PJG9 635 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CDC20BQ86Y33 519 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 SYT14Q8NB59 555 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 PAPD5Q8NDF8 572 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 GNPDA2Q8TDQ7 276 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 BCL2L2Q92843 193 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 PLPPR2Q96GM1 343 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 LURAP1Q96LR2 239 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 KATNB1Q9BVA0 655 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 MRPL13Q9BYD1 178 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CCM2LQ9NUG4 571 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 VNN3Q9NY84 501 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 POFUT2Q9Y2G5 429 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 AMDHD2Q9Y303 409 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 U3KQV3 271 aa12.72□□□□□ -0.37
SQSTM1-205ENST00000464493 CSMD1Q96PZ7 3565 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 CSMD2Q7Z408 3487 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 GNGT2O14610 69 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 FKBP6O75344 327 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 CIB2O75838 187 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 WNT11O96014 354 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 CD14P08571 375 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 QDPRP09417 244 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 HOXB1P14653 301 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 LOXP28300 417 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 ACVR1BP36896 505 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 GSSP48637 474 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 UBE2NP61088 152 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 ERVK-25P63136 954 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 TSPAN31Q12999 210 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 GK3PQ14409 553 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 HIST3H3Q16695 136 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 MICAQ29983 383 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 FAM205BPQ63HN1 556 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 PGBD2Q6P3X8 592 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 KLHL24Q6TFL4 600 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 SEZ6L2Q6UXD5 910 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 OR9Q2Q8NGE9 314 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 MAGEE2Q8TD90 523 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 SLCO4A1Q96BD0 722 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 HS3ST6Q96QI5 342 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 TSPAN32Q96QS1 320 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 ESRP2Q9H6T0 727 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 OBP2BQ9NPH6 170 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 GRHPRQ9UBQ7 328 aa12.71□□□□□ -0.37
SQSTM1-205ENST00000464493 POLQO75417 2590 aa12.71□□□□□ -0.38
SQSTM1-205ENST00000464493 SPG11Q96JI7 2443 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 A6NIZ1 184 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 GASTP01350 101 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 RAP1BP61224 184 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 RAP1AP62834 184 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 RFX4Q33E94 735 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 NCMAPQ5T1S8 102 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 ZNF770Q6IQ21 691 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 SMARCD3Q6STE5 483 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 KLHL17Q6TDP4 642 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 THSD4Q6ZMP0 1018 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 DPY19L2P2Q6ZN68 376 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 ARIH2OSQ8N7S6 290 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 NOXO1Q8NFA2 376 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 ZNF519Q8TB69 540 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 HDAC2Q92769 488 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 MCHR2Q969V1 340 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 UTP4Q969X6 686 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 GPX7Q96SL4 187 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 KCNK17Q96T54 332 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 C1QTNF6Q9BXI9 259 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 NELFAQ9H3P2 528 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 NPAP1Q9NZP6 1156 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 IL20RAQ9UHF4 553 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 ADAM18Q9Y3Q7 739 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 MAGED1Q9Y5V3 778 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 NAV2Q8IVL1 2488 aa12.7□□□□□ -0.38
SQSTM1-205ENST00000464493 TEX15Q9BXT5 2789 aa12.69□□□□□ -0.38
SQSTM1-205ENST00000464493 PDZD2O15018 2839 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms