RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 CARMIL3Q8ND23 1372 aa2.35□□□□□ -2.03
USP40-209ENST00000452724 A0A1B0GVI7 797 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 BTBD17A6NE02 478 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 HAS3O00219 553 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 SURF6O75683 361 aaKnown RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 ERLIN2O94905 339 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 GAPDHP04406 335 aaKnown RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 UBTFL1P0CB47 393 aaPredicted RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 SMIM10L1P0DMW3 83 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 OMGP23515 440 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 ATP5C1P36542 298 aaKnown RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 VHLP40337 213 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 CCR8P51685 355 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 NCBP2P52298 156 aaKnown RBP eCLIP2.34□□□□□ -2.03
USP40-209ENST00000452724 ACTR1AP61163 376 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 ZNF77Q15935 545 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 TTLL9Q3SXZ7 439 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 FAM71E1Q6IPT2 247 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 CASC1Q6TDU7 716 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 RGS9BPQ6ZS82 235 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 LINC00173Q6ZV60 143 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 TGIF2LXQ8IUE1 241 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 ZNF679Q8IYX0 411 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 PUSL1Q8N0Z8 303 aaKnown RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 ZCCHC7Q8N3Z6 543 aaKnown RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 OR10G2Q8NGC3 310 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 OR2G2Q8NGZ5 317 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 ZFP90Q8TF47 636 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 MED8Q96G25 268 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 SMIM10Q96HG1 83 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 IFT74Q96LB3 600 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 BMFQ96LC9 184 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 NPY6RQ99463 290 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 RARRES2Q99969 163 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 KCTD14Q9BQ13 255 aaPredicted RBP2.34□□□□□ -2.03
USP40-209ENST00000452724 GON7Q9BXV9 100 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 LRRC40Q9H9A6 602 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 PEX16Q9Y5Y5 336 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 NPTNQ9Y639 398 aa2.34□□□□□ -2.03
USP40-209ENST00000452724 LRP4O75096 1905 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 LRCOL1A6NCL2 159 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 CCL21O00585 134 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 C1orf105O95561 183 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 C2P06681 752 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 RETP07949 1114 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 ATP1B2P14415 290 aaPredicted RBP2.33□□□□□ -2.04
USP40-209ENST00000452724 ETS2P15036 469 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 ZNF823P16415 610 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 IGFBP3P17936 291 aaPredicted RBP2.33□□□□□ -2.04
USP40-209ENST00000452724 UGT2B15P54855 530 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 RPS21P63220 83 aaKnown RBP2.33□□□□□ -2.04
USP40-209ENST00000452724 ARHGAP19Q14CB8 494 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 FAM83EQ2M2I3 478 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 CENPPQ6IPU0 288 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 KDM7AQ6ZMT4 941 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 LRRC74BQ6ZQY2 392 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 PEX26Q7Z412 305 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 PSTKQ8IV42 348 aaKnown RBP2.33□□□□□ -2.04
USP40-209ENST00000452724 TBC1D21Q8IYX1 336 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 FAM86B1Q8N7N1 296 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 EIF1ADQ8N9N8 165 aaKnown RBP2.33□□□□□ -2.04
USP40-209ENST00000452724 OR2L8Q8NGY9 312 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 C12orf42Q96LP6 360 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 TSSK3Q96PN8 268 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 OSBPL10Q9BXB5 764 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 FN3KRPQ9HA64 309 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 SLC40A1Q9NP59 571 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 OR12D3Q9UGF7 316 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 CD84Q9UIB8 345 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 ZNF639Q9UID6 485 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 PIKFYVEQ9Y2I7 2098 aa2.33□□□□□ -2.04
USP40-209ENST00000452724 A0A1W2PPE3 182 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 A0A1W2PPV9 198 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 CIB4A0PJX0 185 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 OR52A4PA6NMU1 304 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 ZNF726A6NNF4 738 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 FOXE1O00358 373 aaPredicted RBP2.32□□□□□ -2.04
USP40-209ENST00000452724 CDH4P55283 916 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 FBXW4P57775 412 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 IRX3P78415 501 aaPredicted RBP2.32□□□□□ -2.04
USP40-209ENST00000452724 SLC7A9P82251 487 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 PPIL2Q13356 520 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 UBE2SQ16763 222 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 LINC00483Q53H64 154 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 C6orf226Q5I0X4 101 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 LHFPL3Q86UP9 236 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 MREGQ8N565 214 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 ARL6IP6Q8N6S5 226 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 OR8J1Q8NGP2 316 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 OR1L6Q8NGR2 347 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 SH3GL1Q99961 368 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 TMEM59Q9BXS4 323 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 ROPN1BQ9BZX4 212 aaPredicted RBP2.32□□□□□ -2.04
USP40-209ENST00000452724 NOX3Q9HBY0 568 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 NT5MQ9NPB1 228 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 INPP5EQ9NRR6 644 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 CEMIPQ8WUJ3 1361 aa2.32□□□□□ -2.04
USP40-209ENST00000452724 A0A0B4J2A0 478 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 CXCL11O14625 94 aa2.31□□□□□ -2.04
USP40-209ENST00000452724 PSTPIP1O43586 416 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms