RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 VLDLRP98155 873 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 SPIBQ01892 262 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 ZP4Q12836 540 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 ACKR1Q16570 336 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 TMEM108Q6UXF1 575 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 CYP2R1Q6VVX0 501 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 C20orf204Q6ZNR8 217 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 YTHDF3Q7Z739 585 aaKnown RBP12.75□□□□□ -0.37
USP39-206ENST00000448971 CDK20Q8IZL9 346 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 KBTBD8Q8NFY9 601 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 CCDC124Q96CT7 223 aaKnown RBP12.75□□□□□ -0.37
USP39-206ENST00000448971 PYURFQ96I23 114 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 ADAD1Q96M93 576 aaKnown RBP12.75□□□□□ -0.37
USP39-206ENST00000448971 CCL19Q99731 98 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 C1QTNF6Q9BXI9 259 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 ANKRD19PQ9H560 264 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 GPR35Q9HC97 309 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 KRCC1Q9NPI7 259 aaPredicted RBP12.75□□□□□ -0.37
USP39-206ENST00000448971 INIPQ9NRY2 104 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 NDUFAF4Q9P032 175 aa12.75□□□□□ -0.37
USP39-206ENST00000448971 PRPF19Q9UMS4 504 aaKnown RBP12.75□□□□□ -0.37
USP39-206ENST00000448971 A0A087WUU8 490 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 EFCAB9A8MZ26 197 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 INAFM1C9JVW0 142 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 RPL36A-HNRNPH2H7BZ11 118 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 ABCD4O14678 606 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 UBOX5O94941 541 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 BCL10O95999 233 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 T-ENOLP0DO92 83 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 GPR4P46093 362 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 CAPZA2P47755 286 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 DAP3P51398 398 aaKnown RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 ARF1P84077 181 aaKnown RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 TOP3AQ13472 1001 aaPredicted RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 ALG10Q5BKT4 473 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 PHYHD1Q5SRE7 291 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 ANKRD16Q6P6B7 361 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 MBOAT2Q6ZWT7 520 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 CXXC5Q7LFL8 322 aaKnown RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 HDDC2Q7Z4H3 204 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 MEX3DQ86XN8 651 aaKnown RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 C20orf196Q8IYI0 205 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 WDR31Q8NA23 367 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 AKAP1Q92667 903 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP39-206ENST00000448971 ZNF566Q969W8 418 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 TMEM204Q9BSN7 226 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 MUC13Q9H3R2 512 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 NMNAT1Q9HAN9 279 aaPredicted RBP12.74□□□□□ -0.37
USP39-206ENST00000448971 OBP2BQ9NPH6 170 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 POU2F3Q9UKI9 436 aa12.74□□□□□ -0.37
USP39-206ENST00000448971 TRAV27A0A087WT01 109 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 HTR3EA5X5Y0 456 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 DPRXA6NFQ7 191 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 ZNF99A8MXY4 864 aaPredicted RBP12.73□□□□□ -0.37
USP39-206ENST00000448971 HS3ST1O14792 307 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 IGHG1P01857 330 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 SEMG1P04279 462 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 MAKP20794 623 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 PTAFRP25105 342 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 CDH11P55287 796 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 CLRN1P58418 232 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TUBA1BP68363 451 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TUBA4AP68366 448 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 PRKCDQ05655 676 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 SPOCK1Q08629 439 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 MTX3Q5HYI7 312 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TBPL2Q6SJ96 375 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TUBA1AQ71U36 451 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TSEN54Q7Z6J9 526 aaKnown RBP12.73□□□□□ -0.37
USP39-206ENST00000448971 OAFQ86UD1 273 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 RNF113BQ8IZP6 322 aaKnown RBP12.73□□□□□ -0.37
USP39-206ENST00000448971 NOXO1Q8NFA2 376 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 OR13C2Q8NGS9 318 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 OR52J3Q8NH60 311 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 OR6X1Q8NH79 312 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 MOSPD2Q8NHP6 518 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 SLC7A13Q8TCU3 470 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 LIPHQ8WWY8 451 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 IGFBPL1Q8WX77 278 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 FBXW5Q969U6 566 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 SLC25A44Q96H78 314 aaPredicted RBP12.73□□□□□ -0.37
USP39-206ENST00000448971 C7orf34Q96L11 122 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 LRR1Q96L50 414 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 NDEL1Q9GZM8 345 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 ACTR3BQ9P1U1 418 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 TMEM5Q9Y2B1 443 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 POFUT2Q9Y2G5 429 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 HIF3AQ9Y2N7 669 aa12.73□□□□□ -0.37
USP39-206ENST00000448971 A0A1W2PRQ8 180 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 GADD45GO95257 159 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 B4GALT1P15291 398 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 CD40P25942 277 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 SLC9A3P48764 834 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 DGCR6Q14129 220 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 DNAL1Q4LDG9 190 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 C1QTNF12Q5T7M4 302 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 PODNL1Q6PEZ8 512 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 SLC22A25Q6T423 547 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 ZNF813Q6ZN06 617 aa12.72□□□□□ -0.37
USP39-206ENST00000448971 IGFN1Q86VF2 1251 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms