RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 B3GNT2Q9NY97 397 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 MYEF2Q9P2K5 600 aaKnown RBP12.49□□□□□ -0.41
SDC1-204ENST00000429035 SLC7A8Q9UHI5 535 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 DUSP13Q9UII6 198 aa12.49□□□□□ -0.41
SDC1-204ENST00000429035 TRBV5-3A0A0A0MS03 114 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 RNF13O43567 381 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 TPST2O60704 377 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 CH25HO95992 272 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 MT-ATP6P00846 226 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 HPXP02790 462 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 FAM157BP0CG42 384 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 NAT2P11245 290 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 PCMT1P22061 227 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 GLRXP35754 106 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 MTPNP58546 118 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 NKPD1Q17RQ9 610 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 ELFN2Q5R3F8 820 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 SLC35D2Q76EJ3 337 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 CARM1Q86X55 608 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 RFLNBQ8N5W9 214 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 C11orf65Q8NCR3 313 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 CLDND2Q8NHS1 167 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 THOC1Q96FV9 657 aaKnown RBP12.48□□□□□ -0.41
SDC1-204ENST00000429035 RNF121Q9H920 327 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 ZNF224Q9NZL3 707 aa12.48□□□□□ -0.41
SDC1-204ENST00000429035 PPIHO43447 177 aaKnown RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 CHP2O43745 196 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 ZNF500O60304 480 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 MFN2O95140 757 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 TGDSO95455 350 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 ZNF35P13682 527 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 GPX2P18283 190 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 DVL1P1P54792 670 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 ENTPD8Q5MY95 495 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 SWT1Q5T5J6 900 aaKnown RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 REP15Q6BDI9 236 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 RGS7BPQ6MZT1 257 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 ZNF613Q6PF04 617 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 SHQ1Q6PI26 577 aaKnown RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 TTC33Q6PID6 262 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 UGT2A3Q6UWM9 527 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 PXKQ7Z7A4 578 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 OR6T1Q8NGN1 323 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 SLC26A7Q8TE54 656 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 ZNF566Q969W8 418 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 ARHGDIGQ99819 225 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 SH3GL3Q99963 347 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 MS4A5Q9H3V2 200 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 METTL17Q9H7H0 456 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 EVA1AQ9H8M9 152 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 CDH20Q9HBT6 801 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 NANSQ9NR45 359 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 ZNF275Q9NSD4 429 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 GLTPQ9NZD2 209 aa12.47□□□□□ -0.41
SDC1-204ENST00000429035 LEF1Q9UJU2 399 aaPredicted RBP12.47□□□□□ -0.41
SDC1-204ENST00000429035 ANK2Q01484 3957 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 B4DSR2 109 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 MCIDASD6RGH6 385 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ANGPT2O15123 496 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 RGS9O75916 674 aaPredicted RBP12.46□□□□□ -0.41
SDC1-204ENST00000429035 NCR1O76036 304 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 FARS2O95363 451 aaKnown RBP12.46□□□□□ -0.41
SDC1-204ENST00000429035 HIST1H2ABP04908 130 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 CCL2P13500 99 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ACHEP22303 614 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 COL8A2P25067 703 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 EVX1P49640 407 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ATP4BP51164 291 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 CLRN1P58418 232 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 RBBP4Q09028 425 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 SELPLGQ14242 412 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 NPTX1Q15818 432 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ZNF74Q16587 644 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 AGBL2Q5U5Z8 902 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 TMEM53Q6P2H8 277 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 THSD4Q6ZMP0 1018 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 WDR88Q6ZMY6 472 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 HIST3H2AQ7L7L0 130 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 NANOGNBQ7Z5D8 188 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 SKA3Q8IX90 412 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 SLC22A24Q8N4F4 322 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 GPR32P1Q8NGA4 272 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 FGFBP3Q8TAT2 258 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 SNX33Q8WV41 574 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 RDH5Q92781 318 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 HIST1H2ACQ93077 130 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 YIPF5Q969M3 257 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ZNF75AQ96N20 296 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 TAAR3PQ9P1P4 343 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 METRNQ9UJH8 293 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 FBXL3Q9UKT7 428 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 ZNF346Q9UL40 294 aaKnown RBP12.46□□□□□ -0.41
SDC1-204ENST00000429035 SLC7A7Q9UM01 511 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 GRIP1Q9Y3R0 1128 aa12.46□□□□□ -0.41
SDC1-204ENST00000429035 FAM157AC9JC47 383 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 M0QX08 132 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 TPD52L2O43399 206 aaKnown RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 CDC14BO60729 498 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 ENTPD5O75356 428 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 LCKP06239 509 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms