RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 TMEM176BQ3YBM2 270 aaPredicted RBP23.78■■□□□ 1.4
LDB1-202ENST00000425280 SLC35D2Q76EJ3 337 aa23.78■■□□□ 1.4
LDB1-202ENST00000425280 PXKQ7Z7A4 578 aa23.78■■□□□ 1.4
LDB1-202ENST00000425280 IGLV1-36A0A0B4J1U3 117 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 A0A0G2JMM0 328 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 A0A1W2PNV4 684 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 A0A1W2PPB8 328 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 A0A1W2PRS3 328 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 A6NIZ1 184 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 KIR3DP1A8MWS1 328 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 FKBP2P26885 142 aaKnown RBP23.77■■□□□ 1.4
LDB1-202ENST00000425280 DNASE1L1P49184 302 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 RAP1BP61224 184 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 RAP1AP62834 184 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 SIRPAP78324 504 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 HNRNPA0Q13151 305 aaKnown RBP23.77■■□□□ 1.4
LDB1-202ENST00000425280 ZNF227Q86WZ6 799 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 WDFY1Q8IWB7 410 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 INTS14Q96SY0 518 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 SMURF1Q9HCE7 757 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 QPCTLQ9NXS2 382 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 DOCK10Q96BY6 2186 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 CTDSP2O14595 271 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 CTLA4P16410 223 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 OR2B6P58173 313 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 TRAM1Q15629 374 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 ADPRHL1Q8NDY3 354 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 OR6N2Q8NGY6 317 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 NEIL3Q8TAT5 605 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 NKD1Q969G9 470 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 ADAD1Q96M93 576 aaKnown RBP23.77■■□□□ 1.4
LDB1-202ENST00000425280 SACM1LQ9NTJ5 587 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 B3GAT1Q9P2W7 334 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 CRNNQ9UBG3 495 aaPredicted RBP23.77■■□□□ 1.4
LDB1-202ENST00000425280 DKKL1Q9UK85 242 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 HDGFL3Q9Y3E1 203 aa23.77■■□□□ 1.4
LDB1-202ENST00000425280 EP300Q09472 2414 aaPredicted RBP23.76■■□□□ 1.39
LDB1-202ENST00000425280 SHISA3A0PJX4 238 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 CBR3O75828 277 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 P2RY4P51582 365 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 CDK5R1Q15078 307 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 JMJD6Q6NYC1 403 aaPredicted RBP23.76■■□□□ 1.39
LDB1-202ENST00000425280 GHSRQ92847 366 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 TXNDC15Q96J42 360 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 KLHL15Q96M94 604 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 TSPAN10Q9H1Z9 355 aaPredicted RBP23.76■■□□□ 1.39
LDB1-202ENST00000425280 MED29Q9NX70 200 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 PLEKHB1Q9UF11 243 aaPredicted RBP23.76■■□□□ 1.39
LDB1-202ENST00000425280 B3GNT3Q9Y2A9 372 aa23.76■■□□□ 1.39
LDB1-202ENST00000425280 SMIM30A4D0T7 59 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 PSMD9O00233 223 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 GABREP78334 506 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 ETFDHQ16134 617 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 NHLRC1Q6VVB1 395 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 ABHD4Q8TB40 342 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 FOXN4Q96NZ1 517 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 KCNN2Q9H2S1 579 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 PSKH1P11801 424 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 PSMB10P40306 273 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 RAET1LQ5VY80 246 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 RPL22L1Q6P5R6 122 aaKnown RBP23.75■■□□□ 1.39
LDB1-202ENST00000425280 SMIM19Q96E16 107 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 MNTQ99583 582 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 STMN3Q9NZ72 180 aa23.75■■□□□ 1.39
LDB1-202ENST00000425280 IQCMA0A1B0GVH7 501 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 CASKO14936 926 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 CYB561P49447 251 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 CENPAP49450 140 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 CCDC58Q4VC31 144 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 DCAF10Q5QP82 559 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 FAM205BPQ63HN1 556 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 DPY19L4Q7Z388 723 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 KCNK17Q96T54 332 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 LAMP5Q9UJQ1 280 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 OR2M5A3KFT3 312 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 TAF4O00268 1085 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 EDNRAP25101 427 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 RPS27P42677 84 aaKnown RBP23.74■■□□□ 1.39
LDB1-202ENST00000425280 GDI2P50395 445 aaKnown RBP23.74■■□□□ 1.39
LDB1-202ENST00000425280 TUBA3EQ6PEY2 450 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 PLEKHG7Q6ZR37 379 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 IL22RA1Q8N6P7 574 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 DTNBP1Q96EV8 351 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 MRM2Q9UI43 246 aaKnown RBP23.74■■□□□ 1.39
LDB1-202ENST00000425280 TRAPPC4Q9Y296 219 aa23.74■■□□□ 1.39
LDB1-202ENST00000425280 ZNF814B7Z6K7 855 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 SC5DO75845 299 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 HLA-DQA2P01906 255 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 ALOX5APP20292 161 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 CRABP1P29762 137 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 BLVRAP53004 296 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 CAV3P56539 151 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 KCTD20Q7Z5Y7 419 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 MS4A15Q8N5U1 240 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 RNF166Q96A37 237 aaPredicted RBP23.73■■□□□ 1.39
LDB1-202ENST00000425280 MIB2Q96AX9 1013 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 SH3GL3Q99963 347 aa23.73■■□□□ 1.39
LDB1-202ENST00000425280 PPIL3Q9H2H8 161 aaKnown RBP23.73■■□□□ 1.39
LDB1-202ENST00000425280 MRPL22Q9NWU5 206 aaKnown RBP23.73■■□□□ 1.39
LDB1-202ENST00000425280 SULT2B1O00204 365 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms