RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 A0A1W2PR64 198 aa9□□□□□ -0.97
USP54-205ENST00000424265 A0A1W2PRV1 198 aa9□□□□□ -0.97
USP54-205ENST00000424265 YY2O15391 372 aa9□□□□□ -0.97
USP54-205ENST00000424265 NUDT21O43809 227 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 ENTPD6O75354 484 aa9□□□□□ -0.97
USP54-205ENST00000424265 HIST1H2ABP04908 130 aa9□□□□□ -0.97
USP54-205ENST00000424265 AVPR2P30518 371 aa9□□□□□ -0.97
USP54-205ENST00000424265 MPLP40238 635 aa9□□□□□ -0.97
USP54-205ENST00000424265 FBXW4P57775 412 aa9□□□□□ -0.97
USP54-205ENST00000424265 HIST3H2AQ7L7L0 130 aa9□□□□□ -0.97
USP54-205ENST00000424265 OR52P1PQ8NH57 321 aa9□□□□□ -0.97
USP54-205ENST00000424265 HMGCLL1Q8TB92 370 aa9□□□□□ -0.97
USP54-205ENST00000424265 HIST1H2ACQ93077 130 aa9□□□□□ -0.97
USP54-205ENST00000424265 PPT2Q9UMR5 302 aa9□□□□□ -0.97
USP54-205ENST00000424265 SLCO1B1Q9Y6L6 691 aa9□□□□□ -0.97
USP54-205ENST00000424265 H0Y8X5 98 aa9□□□□□ -0.97
USP54-205ENST00000424265 GAPDHSO14556 408 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 PRSS23O95084 383 aa9□□□□□ -0.97
USP54-205ENST00000424265 CSTAP01040 98 aa9□□□□□ -0.97
USP54-205ENST00000424265 CD3GP09693 182 aa9□□□□□ -0.97
USP54-205ENST00000424265 MC3RP41968 323 aa9□□□□□ -0.97
USP54-205ENST00000424265 AKR1C3P42330 323 aa9□□□□□ -0.97
USP54-205ENST00000424265 CAPZBP47756 277 aa9□□□□□ -0.97
USP54-205ENST00000424265 RFX3P48380 749 aa9□□□□□ -0.97
USP54-205ENST00000424265 SRP9P49458 86 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 ABHD18Q0P651 414 aa9□□□□□ -0.97
USP54-205ENST00000424265 ARSJQ5FYB0 599 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 NSUN5P2Q63ZY6 315 aa9□□□□□ -0.97
USP54-205ENST00000424265 RNF165Q6ZSG1 346 aa9□□□□□ -0.97
USP54-205ENST00000424265 OR10G2Q8NGC3 310 aa9□□□□□ -0.97
USP54-205ENST00000424265 NEIL3Q8TAT5 605 aa9□□□□□ -0.97
USP54-205ENST00000424265 EID2BQ96D98 161 aa9□□□□□ -0.97
USP54-205ENST00000424265 LRRC61Q9BV99 259 aa9□□□□□ -0.97
USP54-205ENST00000424265 CNOT2Q9NZN8 540 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 SURF4O15260 269 aa9□□□□□ -0.97
USP54-205ENST00000424265 MGMTP16455 207 aa9□□□□□ -0.97
USP54-205ENST00000424265 PRDX3P30048 256 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 RBBP4Q09028 425 aa9□□□□□ -0.97
USP54-205ENST00000424265 TMEM207Q6UWW9 146 aa9□□□□□ -0.97
USP54-205ENST00000424265 CEACAM20Q6UY09 585 aa9□□□□□ -0.97
USP54-205ENST00000424265 COMMD6Q7Z4G1 85 aa9□□□□□ -0.97
USP54-205ENST00000424265 CPPED1Q9BRF8 314 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 ZCCHC3Q9NUD5 404 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 P2RX2Q9UBL9 471 aa9□□□□□ -0.97
USP54-205ENST00000424265 TMEFF2Q9UIK5 374 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 C19orf67A6NJJ6 358 aa9□□□□□ -0.97
USP54-205ENST00000424265 CHST10O43529 356 aa9□□□□□ -0.97
USP54-205ENST00000424265 ACHEP22303 614 aa9□□□□□ -0.97
USP54-205ENST00000424265 EPHA8P29322 1005 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 FAUP35544 74 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 CASRP41180 1078 aa9□□□□□ -0.97
USP54-205ENST00000424265 GSK3AP49840 483 aa9□□□□□ -0.97
USP54-205ENST00000424265 RPL19P84098 196 aaKnown RBP9□□□□□ -0.97
USP54-205ENST00000424265 SORDQ00796 357 aa9□□□□□ -0.97
USP54-205ENST00000424265 KDM4DQ6B0I6 523 aa9□□□□□ -0.97
USP54-205ENST00000424265 ZNF730Q6ZMV8 503 aa9□□□□□ -0.97
USP54-205ENST00000424265 HIST2H3AQ71DI3 136 aa9□□□□□ -0.97
USP54-205ENST00000424265 SFTPA1Q8IWL2 248 aa9□□□□□ -0.97
USP54-205ENST00000424265 TNFRSF14Q92956 283 aa9□□□□□ -0.97
USP54-205ENST00000424265 F2RL3Q96RI0 385 aa9□□□□□ -0.97
USP54-205ENST00000424265 SULT4A1Q9BR01 284 aa9□□□□□ -0.97
USP54-205ENST00000424265 PRDM7Q9NQW5 492 aa9□□□□□ -0.97
USP54-205ENST00000424265 SDR39U1Q9NRG7 319 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 TP53BP1Q12888 1972 aaPredicted RBP9□□□□□ -0.97
USP54-205ENST00000424265 ELOA3CA0A087WX78 387 aaPredicted RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 ZNF44P15621 663 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 DIO3P55073 304 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 RPS15P62841 145 aaKnown RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 HSPB3Q12988 150 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 GSG1Q2KHT4 349 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 OLFML2AQ68BL7 652 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 FAHD2BQ6P2I3 314 aaPredicted RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 TTLL10Q6ZVT0 673 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 TMEM179BQ7Z7N9 219 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 LRRC25Q8N386 305 aaPredicted RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 OR10R2Q8NGX6 335 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 FAHD2AQ96GK7 314 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 CLCC1Q96S66 551 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 ELOVL1Q9BW60 279 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 V9GYS6 101 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 A0A1W2PPH5 198 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 A6NLC8 198 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 SAP18O00422 153 aaKnown RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 SEMA7AO75326 666 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 GUSBP08236 651 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 MTHFD2P13995 350 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 RAD52P43351 418 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 EVX1P49640 407 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 GUK1Q16774 197 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 CPZQ66K79 652 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 PLBD1Q6P4A8 553 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 GALNTL5Q7Z4T8 443 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 PPP1R3BQ86XI6 285 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 FAM86B1Q8N7N1 296 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 OR8J2Q8NGG1 315 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 MR1Q95460 341 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 ZNF2Q9BSG1 426 aaPredicted RBP8.99□□□□□ -0.97
USP54-205ENST00000424265 OR8U8P0C7N1 319 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 OR5I1Q13606 314 aa8.99□□□□□ -0.97
USP54-205ENST00000424265 PLK5Q496M5 336 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms