RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RPRD1BQ9NQG5 326 aaKnown RBP13.41□□□□□ -0.26
USP4-203ENST00000415188 DDX28Q9NUL7 540 aaKnown RBP13.41□□□□□ -0.26
USP4-203ENST00000415188 GNG8Q9UK08 70 aa13.41□□□□□ -0.26
USP4-203ENST00000415188 N6AMT1Q9Y5N5 214 aa13.41□□□□□ -0.26
USP4-203ENST00000415188 MRPS18BQ9Y676 258 aaKnown RBP13.41□□□□□ -0.26
USP4-203ENST00000415188 TRBV2A0A0J9YWF9 115 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 TEX13CA0A0J9YWL9 993 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 A0A1W2PRG6 482 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 OR6C68A6NDL8 312 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 OR2W5A6NFC9 320 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 TOX3O15405 576 aaPredicted RBP13.4□□□□□ -0.26
USP4-203ENST00000415188 CDC40O60508 579 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP4-203ENST00000415188 UBL3O95164 117 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 NAA10P41227 235 aaPredicted RBP13.4□□□□□ -0.26
USP4-203ENST00000415188 CCR4P51679 360 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 RAB25P57735 213 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 YIF1BQ5BJH7 314 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 ALG10Q5BKT4 473 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 FAM27D1Q5T7N8 215 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 ATP1A1-AS1Q5TC04 95 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 LINC01590Q5TEZ4 76 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 HLA-DQA1Q5Y7H0 255 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 ZNF57Q68EA5 555 aaPredicted RBP13.4□□□□□ -0.26
USP4-203ENST00000415188 BICRALQ6AI39 1079 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 LEG1Q6P5S2 330 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 RPTNQ6XPR3 784 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 GPR135Q8IZ08 494 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 C10orf53Q8N6V4 93 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 MOSPD2Q8NHP6 518 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 TRIM63Q969Q1 353 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 RASD2Q96D21 266 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 C7orf50Q9BRJ6 194 aaKnown RBP13.4□□□□□ -0.26
USP4-203ENST00000415188 TRAF4Q9BUZ4 470 aaPredicted RBP13.4□□□□□ -0.26
USP4-203ENST00000415188 ALG12Q9BV10 488 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 YIPF2Q9BWQ6 316 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 OR8D2Q9GZM6 311 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 HDHD2Q9H0R4 259 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 KLHL1Q9NR64 748 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 MAU2Q9Y6X3 613 aa13.4□□□□□ -0.26
USP4-203ENST00000415188 A0A0G2JMP0 313 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 A0A0X1KG70 313 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 LRRN3E7EW58 273 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 OIP5O43482 229 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 HIST1H2ABP04908 130 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 PSKH1P11801 424 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 IL12BP29460 328 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 AQP2P41181 271 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 OR10A3P58181 314 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 CTXN1P60606 82 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 RPS11P62280 158 aaKnown RBP eCLIP13.39□□□□□ -0.27
USP4-203ENST00000415188 KCNAB1Q14722 419 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 EBPQ15125 230 aaKnown RBP13.39□□□□□ -0.27
USP4-203ENST00000415188 HSD17B12Q53GQ0 312 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 ZNF684Q5T5D7 378 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 HIST3H2AQ7L7L0 130 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 FAM220AQ7Z4H9 259 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 NANOGNBQ7Z5D8 188 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 TCTE3Q8IZS6 198 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 RFLNBQ8N5W9 214 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 ESX1Q8N693 406 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 OR4M2Q8NGB6 313 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 OR6K6Q8NGW6 343 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 OR2T4Q8NH00 348 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 ZNF563Q8TA94 476 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 HIST1H2ACQ93077 130 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 TSLPQ969D9 159 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 SLC41A2Q96JW4 573 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 LMF1Q96S06 567 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 THAP7Q9BT49 309 aaPredicted RBP13.39□□□□□ -0.27
USP4-203ENST00000415188 SLC25A18Q9H1K4 315 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 ZNF304Q9HCX3 659 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 COPS3Q9UNS2 423 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 ZNF281Q9Y2X9 895 aa13.39□□□□□ -0.27
USP4-203ENST00000415188 MPDZO75970 2070 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 ALG1L2C9J202 215 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 PHYHO14832 338 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 CTDSPLO15194 276 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 SELENOFO60613 162 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 TSPAN2O60636 221 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 FZD7O75084 574 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 CPNE3O75131 537 aaKnown RBP13.38□□□□□ -0.27
USP4-203ENST00000415188 ZNF432O94892 652 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 TIAF1O95411 115 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 RENP00797 406 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 YES1P07947 543 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 EPXP11678 715 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 SFTPCP11686 197 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 FOLR1P15328 257 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 PGCP20142 388 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 ALAS2P22557 587 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 CDKN2AP42771 156 aaKnown RBP13.38□□□□□ -0.27
USP4-203ENST00000415188 TATDN3Q17R31 274 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 C6orf15Q6UXA7 325 aaPredicted RBP13.38□□□□□ -0.27
USP4-203ENST00000415188 LIX1LQ8IVB5 337 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 GATSQ8NAP1 163 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 OR1L3Q8NH93 324 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 SMAP2Q8WU79 429 aaPredicted RBP13.38□□□□□ -0.27
USP4-203ENST00000415188 Q96M85 177 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 NUDT9Q9BW91 350 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 ACOXLQ9NUZ1 547 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms