RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SUSD5O60279 629 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 IGHG3P01860 377 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 FUT1P19526 365 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 IL11P20809 199 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 APOBEC1P41238 236 aaKnown RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 HTR3AP46098 478 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 POLR2HP52434 150 aaKnown RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 GFRA1P56159 465 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 RUNX1T1Q06455 604 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 POMZP3Q6PJE2 187 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF322Q6U7Q0 402 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 PLEKHG7Q6ZR37 379 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 TRILQ7L0X0 811 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SHFQ7M4L6 423 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 LHFPL3Q86UP9 236 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ADGRG3Q86Y34 549 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 PARP16Q8N5Y8 322 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ACBD7Q8N6N7 88 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 NEIL3Q8TAT5 605 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SLC25A46Q96AG3 418 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 C3orf49Q96BT1 292 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SGTBQ96EQ0 304 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 CEP19Q96LK0 163 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SFXN2Q96NB2 322 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 WDFY2Q96P53 400 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SP140LQ9H930 580 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ASB6Q9NWX5 421 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 KLHL21Q9UJP4 597 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 LIPGQ9Y5X9 500 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 KMT2BQ9UMN6 2715 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 PRRC2CQ9Y520 2896 aaKnown RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 TMED7-TICAM2A0A0A6YYA0 188 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 FUOMA2VDF0 154 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 NDUFB2O95178 105 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 PEPDP12955 493 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ZNF17P17021 662 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 CXCR1P25024 350 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 BCAP31P51572 246 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 RPS25P62851 125 aaKnown RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 CRYZQ08257 329 aaKnown RBP12.04□□□□□ -0.48
LIMS1-204ENST00000409441 POU4F2Q12837 409 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 LYSMD2Q8IV50 215 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SLC37A3Q8NCC5 494 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 OR51G2Q8NGK0 314 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 GPR137Q96N19 417 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 CCDC32Q9BV29 185 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ENKD1Q9H0I2 346 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 MCCC2Q9HCC0 563 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 SERINC1Q9NRX5 453 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 HAO2Q9NYQ3 351 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 TMED7Q9Y3B3 224 aa12.04□□□□□ -0.48
LIMS1-204ENST00000409441 ZFYVE26Q68DK2 2539 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 TRAV27A0A087WT01 109 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 A0A1B0GVC2 190 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SLC35F4A4IF30 521 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 CCDC182A6NF36 153 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 FAM183AA6NL82 134 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 LINC01387J3KSC0 135 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 CDRT1O95170 752 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 OPN1LWP04000 364 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 PNMTP11086 282 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SLC2A5P22732 501 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 STARP49675 285 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 KRR1Q13601 381 aaKnown RBP12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SLC35F1Q5T1Q4 408 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 ATG4DQ86TL0 474 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-204ENST00000409441 ATP6V1C2Q8NEY4 427 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 OR51A7Q8NH64 312 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 CPT1CQ8TCG5 803 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SPRYD4Q8WW59 207 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-204ENST00000409441 KISS1RQ969F8 398 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-204ENST00000409441 OTULINQ96BN8 352 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 TNFRSF13CQ96RJ3 184 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SLX1AQ9BQ83 275 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SLC30A2Q9BRI3 323 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 BARHL1Q9BZE3 327 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 SNTG1Q9NSN8 517 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 RHBDL2Q9NX52 303 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 TRAPPC4Q9Y296 219 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 NCKAP5O14513 1909 aa12.03□□□□□ -0.48
LIMS1-204ENST00000409441 A0A1B0GTH9 108 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ELOA3DA6NLF2 546 aaPredicted RBP12.02□□□□□ -0.49
LIMS1-204ENST00000409441 C12orf71A8MTZ7 269 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 H3BML4 177 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 PPP1R3DO95685 299 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ACTL6AO96019 429 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 HLA-DPB1P04440 258 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 CD53P19397 219 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 CD79BP40259 229 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 PSMD7P51665 324 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 TDGF1P3P51864 188 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 RAC1P63000 192 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ACTC1P68032 377 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ACTA1P68133 377 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 HSF1Q00613 529 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 FHL1Q13642 323 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 GALEQ14376 348 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ELOA3BQ3SY89 546 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF362Q5T0B9 420 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms