RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RTP2Q5QGT7 225 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 UTP4Q969X6 686 aaKnown RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 TUBB1Q9H4B7 451 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 CD207Q9UJ71 328 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 TRAPPC2LQ9UL33 140 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 PTGDR2Q9Y5Y4 395 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 FABP7O15540 132 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 TOX4O94842 621 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 YIF1AO95070 293 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 SOD1P00441 154 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 ENPP1P22413 925 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF93P35789 620 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 HTR5AP47898 357 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 AQP6Q13520 282 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 IAH1Q2TAA2 248 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 ACOT6Q3I5F7 207 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 SLC39A5Q6ZMH5 540 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 Q6ZRG5 221 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 SLC35G3Q8N808 338 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 OR52I1Q8NGK6 324 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 TSLPQ969D9 159 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 PDXPQ96GD0 296 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 EGLN2Q96KS0 407 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 DCBLD2Q96PD2 775 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 CTRCQ99895 268 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 USB1Q9BQ65 265 aaKnown RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 EGLN1Q9GZT9 426 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 DUSP21Q9H596 190 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 FGF20Q9NP95 211 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 LIN7CQ9NUP9 197 aaKnown RBP5.64□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF586Q9NXT0 402 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 HAO2Q9NYQ3 351 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 FTSJ1Q9UET6 329 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 PCDHGA1Q9Y5H4 931 aa5.64□□□□□ -1.51
SCN1A-203ENST00000409050 SLC9B1P1A6NJY1 282 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF587BE7ETH6 402 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BHLHE40O14503 412 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DVL1O14640 695 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MAGEB4O15481 346 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TBX19O60806 448 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CSO75390 466 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 OR8U8P0C7N1 319 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MAKP20794 623 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DVL1P1P54792 670 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BPIFB3P59826 476 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 LBHQ53QV2 105 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 C6orf132Q5T0Z8 1188 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MFSD12Q6NUT3 480 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 PARS2Q7L3T8 475 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BAGE3Q86Y29 109 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BAGE2Q86Y30 109 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DNAJC5GQ8N7S2 189 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CYB561A3Q8NBI2 242 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF439Q8NDP4 499 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SLC38A5Q8WUX1 472 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM106AQ96A25 262 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 NTNG2Q96CW9 530 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SLC35E1Q96K37 410 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF778Q96MU6 729 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM43Q9BTV4 400 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZDHHC5Q9C0B5 715 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ACTR3CQ9C0K3 210 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 UBE2ZQ9H832 354 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FKRPQ9H9S5 495 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMED7-TICAM2A0A0A6YYA0 188 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 AGRPO00253 132 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SRMP19623 302 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TEAD1P28347 426 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ARR3P36575 388 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SLC35A2P78381 396 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 POU3F1Q03052 451 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 LRRC26Q2I0M4 334 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ARHGAP11BQ3KRB8 267 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SAXO2Q658L1 398 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FBXO46Q6PJ61 603 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 H1FNTQ75WM6 255 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 HSD11B1LQ7Z5J1 315 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FAM58AQ8N1B3 248 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 OR1M1Q8NGA1 313 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GOT1L1Q8NHS2 421 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM18Q96B42 140 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 NKX6-2Q9C056 277 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SLC25A18Q9H1K4 315 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 RANGRFQ9HD47 186 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CMC2Q9NRP2 79 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMED7Q9Y3B3 224 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FAM96BQ9Y3D0 163 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 KLRC4-KLRK1H3BQV0 150 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 H7BYZ3 331 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CTDSP2O14595 271 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GASTP01350 101 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 HOXB5P09067 269 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ALDOCP09972 364 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CT45A10P0DMU9 189 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SERPINA2P20848 420 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GDF1P27539 372 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GCAP28676 217 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CD38P28907 300 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BLVRBP30043 206 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 RPL27P61353 136 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms