RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ALPLP05186 524 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 TMIGD3P0DMS9 266 aaPredicted RBP8.13□□□□□ -1.11
VPS53-203ENST00000401468 GSTM3P21266 225 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 PCYT1AP49585 367 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 ASCL1P50553 236 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 DAPP51397 102 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 ARHGDIAP52565 204 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 RPL18Q07020 188 aaKnown RBP8.13□□□□□ -1.11
VPS53-203ENST00000401468 RASGEF1BQ0VAM2 473 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 TESK1Q15569 626 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 EEF1A1P5Q5VTE0 462 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 FBXW10Q5XX13 1052 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 GTF2IRD2BQ6EKJ0 949 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 RPL13AP3Q6NVV1 102 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 KLHL17Q6TDP4 642 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 CREB3L2Q70SY1 520 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 CHMP1BQ7LBR1 199 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 NANOGNBQ7Z5D8 188 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 OAFQ86UD1 273 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 GTF2IRD2Q86UP8 949 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 KIF18BQ86Y91 864 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 CCDC103Q8IW40 242 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 OR13C2Q8NGS9 318 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 ROBO4Q8WZ75 1007 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 DNAJA3Q96EY1 480 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 CLEC4MQ9H2X3 399 aaPredicted RBP8.13□□□□□ -1.11
VPS53-203ENST00000401468 RNPEPL1Q9HAU8 725 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 NRIP3Q9NQ35 241 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 TMEFF2Q9UIK5 374 aaPredicted RBP8.13□□□□□ -1.11
VPS53-203ENST00000401468 RRP15Q9Y3B9 282 aaKnown RBP8.13□□□□□ -1.11
VPS53-203ENST00000401468 NOX1Q9Y5S8 564 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 FLVCR1Q9Y5Y0 555 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 CR1P17927 2039 aa8.13□□□□□ -1.11
VPS53-203ENST00000401468 TRAV27A0A087WT01 109 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 A0A1W2PPR1 153 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 HSPB2A8KAH6 182 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 DVL2O14641 736 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 ARPC3O15145 178 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 CTAG2O75638 210 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 SMNDC1O75940 238 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS53-203ENST00000401468 ZNF432O94892 652 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 NDUFB2O95178 105 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 TXNDC12O95881 172 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 YES1P07947 543 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 ADORA3P0DMS8 318 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 SAGP10523 405 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 APEHP13798 732 aaKnown RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 ZNF23P17027 643 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 GTF2E2P29084 291 aaKnown RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 AGTR1P30556 359 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 NTF4P34130 210 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 KIR2DL2P43627 348 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 PMS2P3Q13401 168 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 TAF11Q15544 211 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 HSPB2Q16082 182 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 SLC25A35Q3KQZ1 300 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 ARMC4Q5T2S8 1044 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 OGFRL1Q5TC84 451 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 VWA1Q6PCB0 445 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 Q71RC1 249 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 FAM214BQ7L5A3 538 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 FAM122BQ7Z309 247 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 MEX3DQ86XN8 651 aaKnown RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 CDC20BQ86Y33 519 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 CNEP1R1Q8N9A8 125 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 OR9K2Q8NGE7 335 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 ZNF519Q8TB69 540 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 SLC25A36Q96CQ1 311 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 TNFRSF13CQ96RJ3 184 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 C9orf16Q9BUW7 83 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 SFXN3Q9BWM7 321 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 OPN3Q9H1Y3 402 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 SEMA6AQ9H2E6 1030 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 C8orf4Q9NR00 106 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 GALNT8Q9NY28 637 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 JKAMPQ9P055 326 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 EMC3Q9P0I2 261 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 NKX1-2Q9UD57 310 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 ZNF629Q9UEG4 869 aaPredicted RBP8.12□□□□□ -1.11
VPS53-203ENST00000401468 KCNN3Q9UGI6 736 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 CLEC4AQ9UMR7 237 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 RCE1Q9Y256 329 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 POFUT2Q9Y2G5 429 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 CDH10Q9Y6N8 788 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 CADP27708 2225 aa8.12□□□□□ -1.11
VPS53-203ENST00000401468 ZANQ9Y493 2812 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 USF3Q68DE3 2245 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 A6NNC1 897 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 CENPBD1B2RD01 187 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 MCIDASD6RGH6 385 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 BHLHE40O14503 412 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 SOCS2O14508 198 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 IMPA2O14732 288 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 CNOT4O95628 575 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 HIST1H2ABP04908 130 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 CD8BP10966 210 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 HLA-DOBP13765 273 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 PRKACGP22612 351 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 CTSSP25774 331 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 AQP2P41181 271 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms