RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CENPMQ9NSP4 180 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 DDX28Q9NUL7 540 aaKnown RBP10.05□□□□□ -0.8
TCOF1-203ENST00000394269 NLKQ9UBE8 527 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 BOD1L1Q8NFC6 3051 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 COL12A1Q99715 3063 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 RALGAPA1Q6GYQ0 2036 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 VSTM2BA6NLU5 285 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 EEF1E1O43324 174 aaKnown RBP10.05□□□□□ -0.8
TCOF1-203ENST00000394269 CTLA4P16410 223 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 GPR50Q13585 617 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 HYAL4Q2M3T9 481 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 RPL22L1Q6P5R6 122 aaKnown RBP10.05□□□□□ -0.8
TCOF1-203ENST00000394269 AKAP14Q86UN6 197 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 LINC00346Q8IVM7 164 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 TMEM105Q8N8V8 129 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 ZNF441Q8N8Z8 693 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 LRRC75AQ8NAA5 344 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 DDOQ99489 341 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 PTDSS2Q9BVG9 487 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 FBXL2Q9UKC9 423 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 COA3Q9Y2R0 106 aaPredicted RBP10.05□□□□□ -0.8
TCOF1-203ENST00000394269 FREM3P0C091 2139 aa10.05□□□□□ -0.8
TCOF1-203ENST00000394269 DCHS1Q96JQ0 3298 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 CCDC163A0A0D9SF12 145 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 FAM240BA0A1B0GVZ2 78 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 PMS2P1A4D2B8 440 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 TMEM200CA6NKL6 621 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 NPIPA5E9PKD4 350 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ITGA10O75578 1167 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 CCNKO75909 580 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 PNLIPP16233 465 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OTX2P32243 289 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 RFX2P48378 723 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 HBMQ6B0K9 141 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR7E24Q6IFN5 339 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 CORO6Q6QEF8 472 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ZNF517Q6ZMY9 492 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 TMEM156Q8N614 296 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR10AC1Q8NH08 325 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 GCDHQ92947 438 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 PPP1R14BQ96C90 147 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR5B2Q96R09 309 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 NMNAT2Q9BZQ4 307 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 MRPL15Q9P015 296 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 C19orf25Q9UFG5 118 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 NPIPA1Q9UND3 350 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 B3GALT1Q9Y5Z6 326 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 C9J4A7 227 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 TACSTD2P09758 323 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ATF1P18846 271 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SRP9P49458 86 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 TMED10P49755 219 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 RPL27P61353 136 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 EFR3AQ14156 821 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 CDONQ4KMG0 1287 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SLC16A9Q7RTY1 509 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 PRSS45Q7RTY3 260 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 NUP54Q7Z3B4 507 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 RAB43Q86YS6 212 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR4K17Q8NGC6 315 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR51A4Q8NGJ6 313 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SLC39A7Q92504 469 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ZNF775Q96BV0 537 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 MRPL48Q96GC5 212 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ELOVL3Q9HB03 270 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SLCO1C1Q9NYB5 712 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 MRM2Q9UI43 246 aaKnown RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ADAM30Q9UKF2 790 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ARL6IP5O75915 188 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SERPINA3P01011 423 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SRMP19623 302 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 CEP78Q5JTW2 689 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 GDPD1Q8N9F7 314 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 OR5AK2Q8NH90 309 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 DACT3Q96B18 629 aaPredicted RBP10.04□□□□□ -0.8
TCOF1-203ENST00000394269 WDFY2Q96P53 400 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 GNRHR2Q96P88 292 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 RASL10BQ96S79 203 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 JAM3Q9BX67 310 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SEC61A2Q9H9S3 476 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 ZNF160Q9HCG1 818 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 TCF7L1Q9HCS4 588 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 B9D1Q9UPM9 204 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 SLC22A13Q9Y226 551 aa10.04□□□□□ -0.8
TCOF1-203ENST00000394269 A0A1W2PQD3 144 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 PRSS37A4D1T9 235 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 SYPP08247 313 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 CD3GP09693 182 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 PUDPQ08623 228 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 SGCBQ16585 318 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 TMEM176BQ3YBM2 270 aaPredicted RBP10.03□□□□□ -0.8
TCOF1-203ENST00000394269 SLC35D3Q5M8T2 416 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 LRFN4Q6PJG9 635 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 FAM181AQ8N9Y4 354 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 TSEN15Q8WW01 171 aaKnown RBP10.03□□□□□ -0.8
TCOF1-203ENST00000394269 SLC22A4Q9H015 551 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 IGLV3-12A0A075B6K2 115 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 PLPP3O14495 311 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 OR2T1O43869 369 aa10.03□□□□□ -0.8
TCOF1-203ENST00000394269 FZD7O75084 574 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms