RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 LRFN5Q96NI6 719 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ACTR6Q9GZN1 396 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 ERVMER34-1Q9H9K5 563 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 MED29Q9NX70 200 aa13.21□□□□□ -0.29
TCOF1-202ENST00000377797 FKBP2P26885 142 aaKnown RBP13.21□□□□□ -0.3
TCOF1-202ENST00000377797 APEX1P27695 318 aaKnown RBP13.21□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF117Q03924 483 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 EBPQ15125 230 aaKnown RBP13.21□□□□□ -0.3
TCOF1-202ENST00000377797 PRSS53Q2L4Q9 553 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 SLC16A14Q7RTX9 510 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 PLCZ1Q86YW0 608 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 GRPEL2Q8TAA5 225 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 NANOS1Q8WY41 292 aaKnown RBP13.21□□□□□ -0.3
TCOF1-202ENST00000377797 SGCZQ96LD1 299 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 FGF20Q9NP95 211 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-202ENST00000377797 NDUFB11Q9NX14 153 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 LRFN1Q9P244 771 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 HSPB11Q9Y547 144 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 A3GALT2U3KPV4 340 aa13.21□□□□□ -0.3
TCOF1-202ENST00000377797 HSPA12AO43301 675 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 PRICKLE3O43900 615 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CCL11P51671 97 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SNU13P55769 128 aaKnown RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SELENBP1Q13228 472 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 AQP6Q13520 282 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 XAF1Q6GPH4 301 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 PIAS4Q8N2W9 510 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 KTI12Q96EK9 354 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 PARPBPQ9NWS1 579 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SHISA7A6NL88 538 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 NPR2P20594 1047 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SELENOVP59797 346 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 FOXF1Q12946 379 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 RSU1Q15404 277 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ATAD3CQ5T2N8 411 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 OR5T2Q8NGG2 359 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 BORCS8Q96FH0 119 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 METTL8Q9H825 291 aaKnown RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 FAM166BA8MTA8 275 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CRTAPO75718 401 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CPEP16870 476 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 TGFBR3Q03167 851 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 HYAL4Q2M3T9 481 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 PCGF3Q3KNV8 242 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ESPNLQ6ZVH7 1005 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 GRAMD2AQ8IUY3 354 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 OR13C9Q8NGT0 318 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 YIPF6Q96EC8 236 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SLC6A7Q99884 636 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 OR10A4Q9H209 315 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF224Q9NZL3 707 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 RABL2AQ9UBK7 228 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 RABL2BQ9UNT1 228 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 A6NLC8 198 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 KLRC4-KLRK1H3BQV0 150 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CDC42EP2O14613 210 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 FZD7O75084 574 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 SOX18P35713 384 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF141Q15928 474 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CHRFAM7AQ494W8 412 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 PMS2CLQ68D20 193 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 KCTD9Q7L273 389 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ANKRD37Q7Z713 158 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CNEP1R1Q8N9A8 125 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 ZBTB8BQ8NAP8 495 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-202ENST00000377797 MRGPRX4Q96LA9 322 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 CEP250Q9BV73 2442 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 COPZ2Q9P299 210 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 GMEB1Q9Y692 573 aa13.2□□□□□ -0.3
TCOF1-202ENST00000377797 FXYD6-FXYD2A0A087WZ82 144 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 LOC102725191A0A1B0GVB3 256 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 VSTM5A8MXK1 200 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 AMY2BP19961 511 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SCRN3Q0VDG4 424 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF74Q16587 644 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 YIF1BQ5BJH7 314 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 OTPQ5XKR4 325 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 TMEM205Q6UW68 189 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 MRPL21Q7Z2W9 205 aaKnown RBP13.19□□□□□ -0.3
TCOF1-202ENST00000377797 DYNC2LI1Q8TCX1 351 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 FXYD6Q9H0Q3 95 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 IRF2BPLQ9H1B7 796 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SIAEQ9HAT2 523 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 NUDT15Q9NV35 164 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 NOSIPQ9Y314 301 aaKnown RBP13.19□□□□□ -0.3
TCOF1-202ENST00000377797 GPR179Q6PRD1 2367 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SVILO95425 2214 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 C13orf42A0A1B0GVH6 325 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 RAD51DO75771 328 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 AMY2AP04746 511 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 PTH2RP49190 550 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 LTBQ06643 244 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SPEM2Q0P670 501 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 TPBGQ13641 420 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SF3A2Q15428 464 aaKnown RBP13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SPIN3Q5JUX0 258 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 GPR119Q8TDV5 335 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 ZPBPQ9BS86 351 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms