RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LY6G6DO95868 133 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 RAF1P04049 648 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 THY1P04216 161 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 AMY2AP04746 511 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 LINGO3P0C6S8 592 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CYP4B1P13584 511 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 APEHP13798 732 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 AMY2BP19961 511 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 PGCP20142 388 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 GRK5P34947 590 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CAPZA2P47755 286 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 PCYT1AP49585 367 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 NR0B1P51843 470 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 EFNB1P98172 346 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CDK5Q00535 292 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 PPP1R8Q12972 351 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CBFBQ13951 182 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 MFSD13AQ14CX5 517 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 NTRK2Q16620 822 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CTU2Q2VPK5 515 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 ACER2Q5QJU3 275 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 IGFL4Q6B9Z1 124 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 OPN5Q6U736 354 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 GALNTL5Q7Z4T8 443 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CDC20BQ86Y33 519 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CCDC71Q8IV32 467 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 AMER2Q8N7J2 671 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 OR5W2Q8NH69 310 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 APH1BQ8WW43 257 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 TMEM234Q8WY98 164 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CNOT9Q92600 299 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 RND1Q92730 232 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 RFKQ969G6 155 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 FBXW5Q969U6 566 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 C3orf49Q96BT1 292 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 EFHD2Q96C19 240 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 SPACA9Q96E40 222 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF503Q96F45 646 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 NODALQ96S42 347 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CDCA4Q9BXL8 241 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 MRPS18AQ9NVS2 196 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 FBXO34Q9NWN3 711 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 CLN6Q9NWW5 311 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 RHCGQ9UBD6 479 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 PSORS1C1Q9UIG5 152 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 RPL36Q9Y3U8 105 aaKnown RBP6.23□□□□□ -1.41
VPS13A-201ENST00000355766 SNX5Q9Y5X3 404 aa6.23□□□□□ -1.41
VPS13A-201ENST00000355766 HRNRQ86YZ3 2850 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 DPPA5A6NC42 116 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 OR2W5A6NFC9 320 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 UNC119BA6NIH7 251 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 CLDN24A6NM45 220 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 GTPBP1O00178 669 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 AQP7O14520 342 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 FRS3O43559 492 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 RGS10O43665 173 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ICOSLGO75144 302 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 MT-ATP6P00846 226 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 PRG2P13727 222 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 EEF1B2P24534 225 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ELK4P28324 431 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 EPHA2P29317 976 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 PTGS2P35354 604 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 POLR2IP36954 125 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SLC15A1P46059 708 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 IDH2P48735 452 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 P2RX1P51575 399 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 PRPS1P60891 318 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 RPS4XP62701 263 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 IL13RA1P78552 427 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 IL1RL1Q01638 556 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 C17orf67Q0P5P2 114 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 NNATQ16517 81 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 MEP1AQ16819 746 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 PGGHGQ32M88 737 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ZBED5Q49AG3 693 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ZMAT1Q5H9K5 638 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 FCRLBQ6BAA4 426 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SPINK14Q6IE38 97 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 LAIR2Q6ISS4 152 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SLC30A6Q6NXT4 461 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ARHGAP11AQ6P4F7 1023 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 SMARCD3Q6STE5 483 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 RTL4Q6ZR62 310 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 OLIG3Q7RTU3 272 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 GRINAQ7Z429 371 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 GPR141Q7Z602 305 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 EGFL6Q8IUX8 553 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 GID4Q8IVV7 300 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 LNX2Q8N448 690 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 RPRMLQ8N4K4 120 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF614Q8N883 585 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 ZNF321PQ8N8H1 164 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 TMEM163Q8TC26 289 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 FANK1Q8TC84 345 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 TMEM255BQ8WV15 326 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 HGDQ93099 445 aa6.22□□□□□ -1.41
VPS13A-201ENST00000355766 DGCR14Q96DF8 476 aaKnown RBP6.22□□□□□ -1.41
VPS13A-201ENST00000355766 BPIFA2Q96DR5 249 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms