RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ADGRG7Q96K78 797 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF75AQ96N20 296 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TEAD3Q99594 435 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 NUDT22Q9BRQ3 303 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 COPS4Q9BT78 406 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TMEM43Q9BTV4 400 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CNPPD1Q9BV87 410 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TSSK6Q9BXA6 273 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 GPR174Q9BXC1 333 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 KRTAP3-1Q9BYR8 98 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 TPSD1Q9BZJ3 242 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 NXF5Q9H1B4 397 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 OR52D1Q9H346 318 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 HEXA-AS1Q9H8Q6 139 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 C3orf14Q9HBI5 128 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 MMP25Q9NPA2 562 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZCCHC3Q9NUD5 404 aaKnown RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 AURKAIP1Q9NWT8 199 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZNF224Q9NZL3 707 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 RAB23Q9ULC3 237 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 GTF2A1LQ9UNN4 478 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 SH3GLB1Q9Y371 365 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 CDH10Q9Y6N8 788 aa2.06□□□□□ -2.08
VPS54-202ENST00000354504 ZFHX2Q9C0A1 2572 aaPredicted RBP2.06□□□□□ -2.08
VPS54-202ENST00000354504 A0A0A6YYC8 382 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 A0A0G2JMP0 313 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 C2orf92A0A1B0GVN3 265 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NPIPB13A6NJU9 1138 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CPSF4LA6NMK7 179 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 NPIPB4C9JG80 1138 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 I3L1I5 382 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 J3KRW8 73 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TAF4O00268 1085 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MGST3O14880 152 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TOX3O15405 576 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 MAGEB4O15481 346 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 AQP9O43315 295 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ICOSLGO75144 302 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 STAMBPO95630 424 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PNPP00491 289 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TNFP01375 233 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RPN2P04844 631 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 IFNW1P05000 195 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ALPPP05187 535 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 UCHL1P09936 223 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ACADMP11310 421 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FGF5P12034 268 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 HLA-DOBP13765 273 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CD38P28907 300 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EPHA8P29322 1005 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 SHC1P29353 583 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GABRA5P31644 462 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MNDAP41218 407 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ACTR1BP42025 376 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SUCLG1P53597 346 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 HSD17B7P56937 341 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZP1P60852 638 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ACTR1AP61163 376 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ID2Q02363 134 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 C1orf61Q13536 156 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SP5Q6BEB4 398 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 HIST2H2BCQ6DN03 193 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 HIST2H2BDQ6DRA6 164 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 RHBDD2Q6NTF9 364 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ANGPTL8Q6UXH0 198 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ASB18Q6ZVZ8 466 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LINGO2Q7L985 606 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZNF595Q8IYB9 648 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CSNK1A1LQ8N752 337 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TCEANCQ8N8B7 351 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CDRT4Q8N9R6 151 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 DUSP18Q8NEJ0 188 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 CEP76Q8TAP6 659 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SLC2A12Q8TD20 617 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GNPDA2Q8TDQ7 276 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 GRHL3Q8TE85 626 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LCN9Q8WX39 176 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ATOH1Q92858 354 aaPredicted RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 NABP1Q96AH0 204 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LRR1Q96L50 414 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FOPNLQ96NB1 174 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 OR1F2PQ96R84 312 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ZBTB18Q99592 522 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MGLLQ99685 303 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 EFHD1Q9BUP0 239 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 SRMSQ9H3Y6 488 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 REEP1Q9H902 201 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 FN3KRPQ9HA64 309 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LMAN1LQ9HAT1 526 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 PLEKHA2Q9HB19 425 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 APMAPQ9HDC9 416 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 G6PC2Q9NQR9 355 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ADPRHL2Q9NX46 363 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 MRM2Q9UI43 246 aaKnown RBP2.05□□□□□ -2.08
VPS54-202ENST00000354504 BAG5Q9UL15 447 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 ANGPT4Q9Y264 503 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 NPTNQ9Y639 398 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 TRAV27A0A087WT01 109 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 LOC102723971A0A1B0GUV8 181 aa2.05□□□□□ -2.08
VPS54-202ENST00000354504 A0A1W2PNV4 684 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms