RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 AIFM2Q9BRQ8 373 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF346Q9UL40 294 aaKnown RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 MAP1BP46821 2468 aaKnown RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 EPOPA6NHQ4 379 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CTDSP2O14595 271 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 ATG12O94817 140 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 PTTG1O95997 202 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 HIST1H1CP16403 213 aaKnown RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 EPHA1P21709 976 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 IL11RAQ14626 422 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 LRRC28Q86X40 367 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CHPT1Q8WUD6 406 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 PSMF1Q92530 271 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 TRIB1Q96RU8 372 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 TEAD3Q99594 435 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 VN1R1Q9GZP7 353 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 MMP28Q9H239 520 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 NIPAL2Q9H841 368 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 EMC7Q9NPA0 242 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 KCNE1BA0A087WTH5 132 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 NOTOA8MTQ0 251 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 MRPS10P82664 201 aaKnown RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 SYT14P1Q58G82 188 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CD163Q86VB7 1156 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 RANBP3Q9H6Z4 567 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CLEC1BQ9P126 229 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 OR52A1Q9UKL2 312 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 HRH3Q9Y5N1 445 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 TCRBV5S2A0A599 114 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 PRRG2O14669 202 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 CXCL13O43927 109 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 VAMP5O95183 116 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 TNFSF8P32971 234 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 PLGLAQ15195 96 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 MPEG1Q2M385 716 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 ACSM5Q6NUN0 579 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 VASH1Q7L8A9 365 aaPredicted RBP13.62□□□□□ -0.23
COL17A1-201ENST00000353479 SLCO4A1Q96BD0 722 aa13.62□□□□□ -0.23
COL17A1-201ENST00000353479 KLK10O43240 276 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 WNT11O96014 354 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 IFNA5P01569 189 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 QDPRP09417 244 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 VEGFCP49767 419 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 MESP2Q0VG99 397 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 AIMP2Q13155 320 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 IGHV3-15A0A0B4J1V0 119 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 MKRN2OSH3BPM6 223 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SEC14L2O76054 403 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 ATP1B1P05026 303 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 RPL18Q07020 188 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SLC14A1Q13336 389 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 ANKRD34AQ69YU3 496 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 ZNF695Q8IW36 515 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SGPP2Q8IWX5 399 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 FGGYQ96C11 551 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 PHB2Q99623 299 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 CENPOQ9BU64 300 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 C1QTNF6Q9BXI9 259 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 NELFAQ9H3P2 528 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 TXNL4BQ9NX01 149 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 PRR35P0CG20 571 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 CHRNB1P11230 501 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 HTR2CP28335 458 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 MRPL19P49406 292 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 DEFA5Q01523 94 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 UBE2NLQ5JXB2 153 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 ASCC1Q8N9N2 400 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SPACA9Q96E40 222 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SLC6A13Q9NSD5 602 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 HSPB6O14558 160 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 PRAMEF4O60810 478 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 UBCP0CG48 685 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 B3GNT2Q9NY97 397 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 ARPC1BO15143 372 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 S100A6P06703 90 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 LIPCP11150 499 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 EIF3IQ13347 325 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 TRIP6Q15654 476 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 TBC1D28Q2M2D7 210 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 SNAPC3Q92966 411 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 FKRPQ9H9S5 495 aa13.61□□□□□ -0.23
COL17A1-201ENST00000353479 MRPS28Q9Y2Q9 187 aaKnown RBP13.61□□□□□ -0.23
COL17A1-201ENST00000353479 A0A1W2PQF6 199 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 NAP1L6A6NFF2 107 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 TNFSF11O14788 317 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SGCEO43556 437 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MT-ND4P03905 459 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SDHAP31040 664 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 NR4A2P43354 598 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 HCCSP53701 268 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 IKZF1Q13422 519 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 GPR176Q14439 515 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SF3A2Q15428 464 aaKnown RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MBOAT4Q96T53 435 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 CMSS1Q9BQ75 279 aaKnown RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SLC38A1Q9H2H9 487 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 MBD1Q9UIS9 605 aaPredicted RBP13.6□□□□□ -0.23
COL17A1-201ENST00000353479 TFAP2AP05549 437 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 SERPINE2P07093 398 aa13.6□□□□□ -0.23
COL17A1-201ENST00000353479 CLDN15P56746 228 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms