RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GXYLT1Q4G148 440 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 LIN54Q6MZP7 749 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ETV3LQ6ZN32 361 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GTPBP8Q8N3Z3 284 aaPredicted RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 NPEPL1Q8NDH3 523 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 OR51A4Q8NGJ6 313 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 OR6K6Q8NGW6 343 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GPX8Q8TED1 209 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 CCDC107Q8WV48 283 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 EDAQ92838 391 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 COL26A1Q96A83 441 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 NUS1Q96E22 293 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 CPNE2Q96FN4 548 aaPredicted RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 IGSF21Q96ID5 467 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 CNTNAP3BQ96NU0 1288 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TREM1Q9NP99 234 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 FRRS1LQ9P0K9 344 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 GHRLQ9UBU3 117 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 APOBEC3BQ9UH17 382 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 GPR34Q9UPC5 381 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 SLC22A7Q9Y694 548 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TBC1D3KA0A087X1G2 549 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 A0A0B4J2E0 115 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 A0A1B0GX12 115 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 A0A1W2PRU2 124 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TBC1D3BA6NDS4 549 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TBC1D3FA6NER0 549 aaPredicted RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 OR2AT4A6NND4 320 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 FARS2O95363 451 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 CD74P04233 296 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF735P0CB33 412 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 CD34P28906 385 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 RAB5BP61020 215 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 PRDX1Q06830 199 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 SREBF2Q12772 1141 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 RBM39Q14498 530 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 PEA15Q15121 130 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 PON3Q15166 354 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TSC22D1Q15714 1073 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ACER2Q5QJU3 275 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 LINC01590Q5TEZ4 76 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TBC1D3GQ6DHY5 549 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF619Q8N2I2 560 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 OR2L5Q8NG80 312 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 OR13C8Q8NGS7 320 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ARL11Q969Q4 196 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 CCDC74AQ96AQ1 378 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 PIK3IP1Q96FE7 263 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF514Q96K75 400 aaPredicted RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 PTCHD1Q96NR3 888 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 MYADMQ96S97 322 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 NRIP2Q9BQI9 281 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF426Q9BUY5 554 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 SLC46A2Q9BY10 475 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 EGLN1Q9GZT9 426 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 PCBD2Q9H0N5 130 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 TMEM27Q9HBJ8 222 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 WBP1LQ9NX94 342 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 RCC2Q9P258 522 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 MBD2Q9UBB5 411 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 MRM2Q9UI43 246 aaKnown RBP6.18□□□□□ -1.42
VPS39-202ENST00000348544 ZNF780BQ9Y6R6 833 aa6.18□□□□□ -1.42
VPS39-202ENST00000348544 SPTBP11277 2137 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SCN3AQ9NY46 2000 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 TRBV5-7A0A0A0MS05 114 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 A0A1B0GWA3 101 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 GXYLT2A0PJZ3 443 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 F8VVB4 439 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 F8VWA3 439 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 NARSO43776 548 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 LDB3O75112 727 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 RAB3DO95716 219 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 S100A9P06702 114 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 ITGA5P08648 1049 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 FAM157CP0CG43 387 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 C6P13671 934 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 FOSL1P15407 271 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 MUC1P15941 1255 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 ABCD3P28288 659 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 PRSS3P35030 304 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 POU3F4P49335 361 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 PPT1P50897 306 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 IRF4Q15306 451 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 EIF2S3LQ2VIR3 472 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 SLC29A4Q7RTT9 530 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZAR1Q86SH2 424 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 NAA40Q86UY6 237 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 AMZ2Q86W34 360 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZNF227Q86WZ6 799 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 OR4N5Q8IXE1 308 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 TCEAL8Q8IYN2 117 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SHISA5Q8N114 240 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZNF511Q8NB15 262 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZSCAN1Q8NBB4 408 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 OR5AK2Q8NH90 309 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 STOML3Q8TAV4 291 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 TMED6Q8WW62 240 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 RASD2Q96D21 266 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SEH1LQ96EE3 360 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms