RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RRAS2P62070 204 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 MRPL28Q13084 256 aaKnown RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 RIN1Q13671 783 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 OR7E24Q6IFN5 339 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ADGRG3Q86Y34 549 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 EXD3Q8N9H8 876 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TSEN15Q8WW01 171 aaKnown RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 HLA-CQ95604 372 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TMEM106AQ96A25 262 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ARL5BQ96KC2 179 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 AKIRIN1Q9H9L7 192 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-201ENST00000341247 ELOVL3Q9HB03 270 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TAS2R10Q9NYW0 307 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 KLK11Q9UBX7 282 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 V9GY05 133 aa9.35□□□□□ -0.91
LIMA1-201ENST00000341247 TRAV36DV7A0A075B6V5 113 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ALG1L2C9J202 215 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 GATBO75879 557 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 UBL3O95164 117 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 WNT11O96014 354 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 TACSTD2P09758 323 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 PTBP1P26599 531 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 GALNSP34059 522 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 RNF4P78317 190 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CDK10Q15131 360 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 KIF26BQ2KJY2 2108 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 PLA1AQ53H76 456 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ARSKQ6UWY0 536 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 STAC2Q6ZMT1 411 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MAMDC2Q7Z304 686 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SPEM1Q8N4L4 309 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 OR5M1Q8NGP8 315 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SYNPRQ8TBG9 265 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MVB12AQ96EY5 273 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ZC3HAV1LQ96H79 300 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MAP6Q96JE9 813 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SLC41A2Q96JW4 573 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 RNF170Q96K19 258 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 LRFN5Q96NI6 719 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SNX18Q96RF0 628 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 NDEL1Q9GZM8 345 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 APMAPQ9HDC9 416 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 EXOSC3Q9NQT5 275 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ABRACLQ9P1F3 81 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MYEF2Q9P2K5 600 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SUSD2Q9UGT4 822 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SPATA2Q9UM82 520 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 RCE1Q9Y256 329 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ITGA10O75578 1167 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 HEXBP07686 556 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CTLA4P16410 223 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ADRA2CP18825 462 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 HLA-DMAP28067 261 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 GDNFP39905 211 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 FMODQ06828 376 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SNTB2Q13425 540 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CBFBQ13951 182 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 INPP5JQ15735 1006 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 C1orf140Q5VVS0 124 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CDC20BQ86Y33 519 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 TEX19Q8NA77 164 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 OR52I2Q8NH67 350 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 AKAP1Q92667 903 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MS4A3Q96HJ5 214 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 KLHL15Q96M94 604 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 PTDSS2Q9BVG9 487 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 DPAGT1Q9H3H5 408 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ING3Q9NXR8 418 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 FKBP7Q9Y680 259 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ADAMTS20P59510 1910 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 BOD1L1Q8NFC6 3051 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MEIS3P1A6NDR6 274 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 TRABD2BA6NFA1 517 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ANXA2P2A6NMY6 339 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 TCRBP04435 133 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ANXA2P07355 339 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CCKBRP32239 447 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SLC6A8P48029 635 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ARRB1P49407 418 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SLC25A1P53007 311 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SNTA1Q13424 505 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 OR7A5Q15622 319 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 BTBD16Q32M84 506 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 Q499Y3 187 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 CCDC58Q4VC31 144 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 ZNF684Q5T5D7 378 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 COX15Q7KZN9 410 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 OVCH1Q7RTY7 1134 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 OR2G2Q8NGZ5 317 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 SLC25A38Q96DW6 304 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 RAB33BQ9H082 229 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 MED28Q9H204 178 aa9.34□□□□□ -0.91
LIMA1-201ENST00000341247 PCDHGA9Q9Y5G4 932 aaKnown RBP9.34□□□□□ -0.91
LIMA1-201ENST00000341247 EIF1AYO14602 144 aaKnown RBP9.33□□□□□ -0.92
LIMA1-201ENST00000341247 GPRIN2O60269 458 aa9.33□□□□□ -0.92
LIMA1-201ENST00000341247 GMDSO60547 372 aa9.33□□□□□ -0.92
LIMA1-201ENST00000341247 ALOX5APP20292 161 aa9.33□□□□□ -0.92
LIMA1-201ENST00000341247 EIF1AXP47813 144 aaKnown RBP9.33□□□□□ -0.92
LIMA1-201ENST00000341247 ADAM8P78325 824 aa9.33□□□□□ -0.92
LIMA1-201ENST00000341247 IL10RAQ13651 578 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms