RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RBMY1A1P0DJD3 496 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MTHFD2P13995 350 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CHN1P15882 459 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 NPPBP16860 134 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 HOXA5P20719 270 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 AADACP22760 399 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CASQ1P31415 396 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TNNT3P45378 269 aaPredicted RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SRP9P49458 86 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SERPINB8P50452 374 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MNAT1P51948 309 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ARHGDIAP52565 204 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 DSTNP60981 165 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SEC61A1P61619 476 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 BTG1P62324 171 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 DNM1Q05193 864 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MGAT5Q09328 741 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SLC10A7Q0GE19 358 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 FOXF2Q12947 444 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PRKG2Q13237 762 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SLC29A2Q14542 456 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 OASLQ15646 514 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LIPKQ5VXJ0 399 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 RNLSQ5VYX0 342 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ARL9Q6T311 187 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF836Q6ZNA1 936 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 FRMD7Q6ZUT3 714 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 FAM47EQ6ZV65 393 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 FCRLAQ7L513 359 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PAGE2Q7Z2X7 111 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MYO1HQ8N1T3 1032 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF525Q8N782 197 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LSMEM1Q8N8F7 131 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TSEN2Q8NCE0 465 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LINC01560Q8TB33 94 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CKAP2Q8WWK9 683 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PATE1Q8WXA2 126 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 HAVCR1Q96D42 359 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 RNF183Q96D59 192 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SERPINB12Q96P63 405 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 GPR78Q96P69 363 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 NICN1Q9BSH3 213 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SSBP3Q9BWW4 388 aaPredicted RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LRRC2Q9BYS8 371 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MYLK2Q9H1R3 596 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 WDR41Q9HAD4 459 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 GRPEL1Q9HAV7 217 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 SMURF1Q9HCE7 757 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 UBP1Q9NZI7 540 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PPP4R1LQ9P1A2 415 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF180Q9UJW8 692 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF225Q9UK10 706 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 DNAJC12Q9UKB3 198 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 BLOC1S6Q9UL45 172 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LAMP3Q9UQV4 416 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CACNA1DQ01668 2161 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CENPVL3A0A0U1RRI6 287 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 H0YC42 278 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PYCARD-AS1I3L0S3 204 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 I3L521 148 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LGALS8O00214 317 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CLOCKO15516 846 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 HS6ST1O60243 411 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CIDEAO60543 219 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 BCAS1O75363 584 aaPredicted RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TGFAP01135 160 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CPA1P15085 419 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 COL8A2P25067 703 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CAPGP40121 348 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CDKN2BP42772 138 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ARHGDIBP52566 201 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 RWDD2BP57060 319 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 RPS13P62277 151 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 DLG4P78352 724 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CNN3Q15417 329 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CD226Q15762 336 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ANKRD39Q53RE8 183 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF311Q5JNZ3 666 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 EEF1AKMT2Q5JPI9 291 aaKnown RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TEX30Q5JUR7 227 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ZNF626Q68DY1 528 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 FRMPD2BQ6IN97 320 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 HAGHLQ6PII5 290 aaPredicted RBP1.2□□□□□ -2.22
LINC00643-201ENST00000334389 PLXDC2Q6UX71 529 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 MBOAT1Q6ZNC8 495 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LINC00696Q6ZRV3 163 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 VN1R5Q7Z5H4 357 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 UBE3DQ7Z6J8 389 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TRIM74Q86UV6 250 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 TRIM73Q86UV7 250 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 LUZP1Q86V48 1076 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ANGPTL5Q86XS5 388 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 ARHGEF19Q8IW93 802 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 OR8H3Q8N146 312 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 RPRMLQ8N4K4 120 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 CNTD1Q8N815 330 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 NEK11Q8NG66 645 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 OR7G2Q8NG99 324 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 OR4N2Q8NGD1 307 aa1.2□□□□□ -2.22
LINC00643-201ENST00000334389 OR8B3Q8NGG8 313 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms