RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CPMP14384 443 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 FPR3P25089 353 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 I6L893 689 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 STATHP02808 62 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 SOD2P04179 222 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 Q6ZTK2 550 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 OVCH1Q7RTY7 1134 aa13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF551Q7Z340 670 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-201ENST00000328333 ZCWPW2A0A1B0GU75 182 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 RPL17P18621 184 aaKnown RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 RANBP10Q6VN20 620 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 CPNE8Q86YQ8 564 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 PRR18Q8N4B5 295 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SPNS1Q9H2V7 528 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 NGBQ9NPG2 151 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 TREX1Q9NSU2 369 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 USP36Q9P275 1121 aaKnown RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 NPRL2Q8WTW4 380 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 UBTD2Q8WUN7 234 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 REEP6Q96HR9 211 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 A4GALTQ9NPC4 353 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 EIF1P41567 113 aaKnown RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 ZNF85Q03923 595 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SIX1Q15475 284 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 NPSR1Q6W5P4 371 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 DGAT2L6Q6ZPD8 337 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 JAM3Q9BX67 310 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 RAB18Q9NP72 206 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 DVL1O14640 695 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SPINT2O43291 252 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 PAPLNO95428 1278 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 PSMB6P28072 239 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 DVL1P1P54792 670 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 FCN2Q15485 313 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 OR1Q1Q15612 314 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 GATSQ8NAP1 163 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 PHYHIPLQ96FC7 376 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 CMTM3Q96MX0 182 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 BCO1Q9HAY6 547 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 TYRP1P17643 537 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SLC11A1P49279 550 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 C17orf107Q6ZR85 190 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 CCNL2Q96S94 520 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 DUSP22Q9NRW4 184 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 TOPAZ1Q8N9V7 1692 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 H0Y8G0 127 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 GDI1P31150 447 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SNU13P55769 128 aaKnown RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 MBTPS1Q14703 1052 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SLC35G3Q8N808 338 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 ARFGEF1Q9Y6D6 1849 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 FEZF1A0PJY2 475 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 LEFTY2O00292 366 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 HIST1H1TP22492 207 aaPredicted RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 SEMG2Q02383 582 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 HSD17B11Q8NBQ5 300 aa13.25□□□□□ -0.29
COL7A1-201ENST00000328333 DUS3LQ96G46 650 aaKnown RBP13.25□□□□□ -0.29
COL7A1-201ENST00000328333 MT-ATP6P00846 226 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 FBP1P09467 338 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 CPEP16870 476 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ADAM5Q6NVV9 412 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 BPIFCQ8NFQ6 507 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 FAM174AQ8TBP5 190 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 FOXJ1Q92949 421 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 LRRC30A6NM36 301 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ITGB7P26010 798 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 HSF1Q00613 529 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ARHGAP11BQ3KRB8 267 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SLC36A2Q495M3 483 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SLC24A4Q8NFF2 622 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SEH1LQ96EE3 360 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 PIGQQ9BRB3 760 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 GNG12Q9UBI6 72 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 PADI1Q9ULC6 663 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 GOLT1BQ9Y3E0 138 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SNED1Q8TER0 1413 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 PDCD11Q14690 1871 aaKnown RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 MEIS3P1A6NDR6 274 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ABHD4Q8TB40 342 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 TMX2-CTNND1H3BSU7 103 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 LMX1AQ8TE12 382 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 UBE2MP61081 183 aaKnown RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 RPS25P62851 125 aaKnown RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 UTP4Q969X6 686 aaKnown RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 DDOQ99489 341 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 FAM173AQ9BQD7 235 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 VN1R3Q9BXE9 311 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 TRAV20A0A0B4J274 112 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 PHF1O43189 567 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 KIAA1024LP59773 190 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 RTL10Q7L3V2 364 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 GABARAPL1Q9H0R8 117 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 NOX4Q9NPH5 578 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 CBLCQ9ULV8 474 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 USF1P22415 310 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-201ENST00000328333 PPP1CBP62140 327 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 SLC35A1P78382 337 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 EMC4Q5J8M3 183 aa13.24□□□□□ -0.29
COL7A1-201ENST00000328333 ABHD17BQ5VST6 288 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms