RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 MPV17LQ2QL34 196 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 ZNF528Q3MIS6 628 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 SFXN4Q6P4A7 337 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 LGI3Q8N145 548 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 NPEPL1Q8NDH3 523 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 FAM186AA6NE01 2351 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 RGS13O14921 159 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 NSA2O95478 260 aaKnown RBP3.72□□□□□ -1.81
USH2A-201ENST00000307340 C6P13671 934 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 IDH3GP51553 393 aaPredicted RBP3.72□□□□□ -1.81
USH2A-201ENST00000307340 NFATC4Q14934 902 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 LRIT3Q3SXY7 679 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 DCAF12Q5T6F0 453 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 LETMD1Q6P1Q0 360 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 MRPL43Q8N983 215 aaKnown RBP3.72□□□□□ -1.81
USH2A-201ENST00000307340 VSTM2AQ8TAG5 236 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 ZNF384Q8TF68 577 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 ACPTQ9BZG2 426 aa3.72□□□□□ -1.81
USH2A-201ENST00000307340 FGF20Q9NP95 211 aaPredicted RBP3.72□□□□□ -1.81
USH2A-201ENST00000307340 TRAV36DV7A0A075B6V5 113 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 FZD6O60353 706 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 HOXB1P14653 301 aaPredicted RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 CES4AQ5XG92 561 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 ABLIM2Q6H8Q1 611 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 MYO7BQ6PIF6 2116 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 CFAP52Q8N1V2 620 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 KHSRPQ92945 711 aaKnown RBP eCLIP3.71□□□□□ -1.81
USH2A-201ENST00000307340 LCORQ96JN0 433 aaPredicted RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 PWWP2AQ96N64 755 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 PLEK2Q9NYT0 353 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 KCMF1Q9P0J7 381 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 NDUFS6O75380 124 aaKnown RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 CSNK1EP49674 416 aaKnown RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 CLDN15P56746 228 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 CLINT1Q14677 625 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 RAB35Q15286 201 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 USF2Q15853 346 aaPredicted RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 ATAD3CQ5T2N8 411 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 NETO2Q8NC67 525 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 MMABQ96EY8 250 aaPredicted RBP3.71□□□□□ -1.81
USH2A-201ENST00000307340 CTDSP1Q9GZU7 261 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 IFT22Q9H7X7 185 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 RAB18Q9NP72 206 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 OSGIN1Q9UJX0 560 aa3.71□□□□□ -1.81
USH2A-201ENST00000307340 IGLV3-16A0A075B6K0 115 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TRHRP34981 398 aaPredicted RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 CLDN20P56880 219 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 RPS24P62847 133 aaKnown RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 ACSM3Q53FZ2 586 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 FAHD1Q6P587 224 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ZNF100Q8IYN0 542 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 DUSP18Q8NEJ0 188 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 OR4K15Q8NH41 348 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 RAB3CQ96E17 227 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ALKBH4Q9NXW9 302 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ADAMTS6Q9UKP5 1117 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 UBE2J1Q9Y385 318 aaPredicted RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 A0A0D9SEW6 157 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 PCCBP05166 539 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 EVX1P49640 407 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 SELENBP1Q13228 472 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 C22orf42Q6IC83 251 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 LSMEM1Q8N8F7 131 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 OR5D16Q8NGK9 328 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 GPATCH2LQ9NWQ4 482 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ADORA3P0DMS8 318 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ZP2Q05996 745 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 NAA40Q86UY6 237 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 OR8G5Q8NG78 346 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 OR5D13Q8NGL4 314 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TMEM19Q96HH6 336 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 BPIFA1Q9NP55 256 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TAS2R5Q9NYW4 299 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CD207Q9UJ71 328 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TRBV5-4A0A0C4DH59 114 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 SOCS2O14508 198 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 SDC1P18827 310 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ZNF93P35789 620 aaPredicted RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 IRF9Q00978 393 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TBPL2Q6SJ96 375 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CLEC10AQ8IUN9 316 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TCRBV7S2A1N4TA0A589 114 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CORTO00230 105 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 SNAI1O95863 264 aaPredicted RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 GABRA3P34903 492 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CAMLGP49069 296 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ISL1P61371 349 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.71□□□□□ -1.82
USH2A-201ENST00000307340 ST7LQ8TDW4 575 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 C4orf36Q96KX1 117 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 ATG10Q9H0Y0 220 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CTNSO60931 367 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 MMP7P09237 267 aaPredicted RBP3.71□□□□□ -1.82
USH2A-201ENST00000307340 ACHEP22303 614 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 GPR18Q14330 331 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 TAF9Q16594 264 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 CLEC12AQ5QGZ9 265 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 NANOGP1Q8N7R0 232 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 KCT2Q8NC54 265 aa3.71□□□□□ -1.82
USH2A-201ENST00000307340 AGBL5Q8NDL9 886 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms