RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MEF2DQ14814 521 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MORN1Q5T089 497 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR2T2Q6IF00 324 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TP53I13Q8NBR0 393 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR2T27Q8NH04 317 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR5B3Q8NH48 314 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 GPR119Q8TDV5 335 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MARC2Q969Z3 335 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MS4A4AQ96JQ5 239 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TBL1XR1Q9BZK7 514 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MYOZ1Q9NP98 299 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 BET1LQ9NYM9 111 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SNX11Q9Y5W9 270 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 AQP7P3A6NL99 342 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SERPINE2P07093 398 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 DIO1P49895 249 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 HTR3DQ70Z44 454 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 MEPCEQ7L2J0 689 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR10D4PQ8NGN7 298 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SEC22AQ96IW7 307 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ZIC5Q96T25 663 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 UTP23Q9BRU9 249 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 NOX3Q9HBY0 568 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 B3GAT2Q9NPZ5 323 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SERINC1Q9NRX5 453 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RHBDD3Q9Y3P4 386 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ACTL7AQ9Y615 435 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ABCD4O14678 606 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 HPGDSO60760 199 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ADRB1P08588 477 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 NPY1RP25929 384 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 CD52P31358 61 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RFC3P40938 356 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RAB11AP62491 216 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RACK1P63244 317 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 BAXQ07812 192 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 PDGFRLQ15198 375 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 RBMS2Q15434 407 aaKnown RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 FCN2Q15485 313 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SLC9A3R2Q15599 337 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TMEM97Q5BJF2 176 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 CYB5R2Q6BCY4 276 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ENPP7Q6UWV6 458 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 BTNL8Q6UX41 500 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR52I1Q8NGK6 324 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 OR5D16Q8NGK9 328 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 TMEM40Q8WWA1 233 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SDHCQ99643 169 aaPredicted RBP5.93□□□□□ -1.46
VPS35-201ENST00000299138 GDF15Q99988 308 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 SEC22CQ9BRL7 303 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ELOVL2Q9NXB9 296 aa5.93□□□□□ -1.46
VPS35-201ENST00000299138 ADAMTSL1Q8N6G6 1762 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MICAL3Q7RTP6 2002 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 HEPACAM2A8MVW5 462 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 G3V3Q6 166 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 LGALS8O00214 317 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 OR2T7P0C7T2 308 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SPP1P10451 314 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 LAG3P18627 525 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PYCR1P32322 319 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SOX3P41225 446 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RPS18P62269 152 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 SIM1P81133 766 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 SLC5A12Q1EHB4 618 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 UBE2NLQ5JXB2 153 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 FFAR4Q5NUL3 377 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 B3GLCTQ6Y288 498 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NUP37Q8NFH4 326 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TMEM239Q8WW34 195 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SPIN2AQ99865 258 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SPIN2BQ9BPZ2 258 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SEMA4GQ9NTN9 838 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 STEAP1Q9UHE8 339 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MOKQ9UQ07 419 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SLC5A10A0PJK1 596 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TRIM77I1YAP6 450 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SOX1O00570 391 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 SOCS6O14544 535 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 DVL2O14641 736 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MSTNO14793 375 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CCKARP32238 428 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 GDF5P43026 501 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CCINQ13939 588 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 HES1Q14469 280 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 AANATQ16613 207 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SHEQ5VZ18 495 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PRR27Q6MZM9 219 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TCTN3Q6NUS6 607 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SFXN4Q6P4A7 337 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ZNF322Q6U7Q0 402 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 FBXL6Q8N531 539 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 FYTTD1Q96QD9 318 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 C1orf198Q9H425 327 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 DDX31Q9H8H2 851 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 KCNIP1Q9NZI2 227 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TNS1Q9HBL0 1735 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 F6UZH7 168 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 STATHP02808 62 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SLC10A3P09131 477 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 AKAIN1P0CW23 69 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms