RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FABP9Q0Z7S8 132 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 CPZQ66K79 652 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 OR7E24Q6IFN5 339 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 WWTR1Q9GZV5 400 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 APOBEC3GQ9HC16 384 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 MIA3Q5JRA6 1907 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 PLSCR1O15162 318 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 RPS23P62266 143 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC35G1Q2M3R5 365 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 NECAP1Q8NC96 275 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 PHYHIPQ92561 330 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 KLRG1Q96E93 195 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF300Q96RE9 604 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 CPEB1Q9BZB8 566 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 RBFOX1Q9NWB1 397 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 ENTPD8Q5MY95 495 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 SPACA1Q9HBV2 294 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 DLL4Q9NR61 685 aa12.94□□□□□ -0.34
CCDC88A-201ENST00000263630 RFPL4AA6NLU0 287 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 RFPL4AL1F8VTS6 287 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GOSR1O95249 250 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PARD6AQ9NPB6 346 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR171O14626 319 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 SIAH2O43255 324 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 SIM1P81133 766 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NHLH1Q02575 133 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NHLH2Q02577 135 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 DCAF12L1Q5VU92 463 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 OR14A16Q8NHC5 309 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 UBALD1Q8TB05 177 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ESRP2Q9H6T0 727 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PEX10O60683 326 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 EIF1BO60739 113 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF628Q5EBL2 1059 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 OR51A4Q8NGJ6 313 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR17Q13304 367 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PGGHGQ32M88 737 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 TFAP2EQ6VUC0 442 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 HSD17B11Q8NBQ5 300 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 UTP23Q9BRU9 249 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ZPBPQ9BS86 351 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 DIP2BQ9P265 1576 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PRAMEF25A6NGN4 478 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 OR5G3P0C626 314 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NKX2-1P43699 371 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 OR1Q1Q15612 314 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PRAMEF5Q5TYX0 476 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PRAMEF6Q5VXH4 476 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 BTNL3Q6UXE8 466 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 AMBRA1Q9C0C7 1298 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NKX2-4Q9H2Z4 354 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 OR52D1Q9H346 318 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NOX4Q9NPH5 578 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 SOWAHBA6NEL2 793 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GDNFP39905 211 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 RAD52P43351 418 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PPP1CBP62140 327 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 TPBGQ13641 420 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 THEM4Q5T1C6 240 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 SEC22AQ96IW7 307 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 PKMYT1Q99640 499 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GORASP2Q9H8Y8 452 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF593O00488 134 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 CRISP2P16562 243 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF468Q5VIY5 522 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 RP1L1Q8IWN7 2480 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 CLECL1Q8IZS7 167 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 ST8SIA2Q92186 375 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 INPP5KQ9BT40 448 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 SIX2Q9NPC8 291 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 MPGP29372 298 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 CARD18P57730 90 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 HBA1P69905 142 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 LBX2Q6XYB7 198 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 NAT6Q93015 286 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 LYSMD1Q96S90 227 aa12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 GSX1Q9H4S2 264 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-201ENST00000263630 CLDN24A6NM45 220 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 HNF1AP20823 631 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 GPR12P47775 334 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 PPP2CBP62714 309 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 DVL3Q92997 716 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 SEH1LQ96EE3 360 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 KCTD3Q9Y597 815 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 TRAV27A0A087WT01 109 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ERVFC1-1P60608 527 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 NAXDQ8IW45 347 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2L13Q8N349 312 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF561Q8N587 486 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC46A1Q96NT5 459 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 ESPL1Q14674 2120 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 HSBP1O75506 76 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2F2O95006 317 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 VNN1O95497 513 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 TNFSF8P32971 234 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 LMAN2Q12907 356 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2F1Q13607 317 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 MOGAT2Q3SYC2 334 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 P4HTMQ9NXG6 502 aa12.92□□□□□ -0.34
CCDC88A-201ENST00000263630 PXDC1Q5TGL8 231 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms