RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CGGBP1Q9UFW8 167 aaPredicted RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 ZNF230Q9UIE0 474 aaPredicted RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 FBXL2Q9UKC9 423 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 CYP8B1Q9UNU6 501 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 BAIAP2Q9UQB8 552 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 DCDC2BA2VCK2 349 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 HCRTR2O43614 444 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 MPZL1O95297 269 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 CD3DP04234 171 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 CD53P19397 219 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 NFYAP23511 347 aaPredicted RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 DYRK1AQ13627 763 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 ALKBH1Q13686 389 aaKnown RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 Q499Y3 187 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 FAM74A1Q5RGS3 127 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 METTL11BQ5VVY1 283 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 LIN54Q6MZP7 749 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 CHRDL2Q6WN34 429 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 BIVMQ86UB2 503 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 BPHLQ86WA6 291 aaPredicted RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 SLC35F3Q8IY50 421 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 TEX19Q8NA77 164 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 ZBTB44Q8NCP5 570 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 SLC2A12Q8TD20 617 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 DUSP19Q8WTR2 217 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 SCARF2Q96GP6 870 aaPredicted RBP8.29□□□□□ -1.08
MSH4-201ENST00000263187 DMRTA2Q96SC8 542 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 PTDSS2Q9BVG9 487 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 POMT2Q9UKY4 750 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 FREM3P0C091 2139 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 TICRRQ7Z2Z1 1910 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 SPAG17Q6Q759 2223 aa8.29□□□□□ -1.08
MSH4-201ENST00000263187 C17orf105B2RV13 164 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 PDCD5O14737 125 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 CDC40O60508 579 aaKnown RBP eCLIP8.28□□□□□ -1.08
MSH4-201ENST00000263187 UPK3AO75631 287 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 WNT11O96014 354 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 IGF2P01344 180 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SPARCP09486 303 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 MST1P26927 711 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 TACR3P29371 465 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 EGR4Q05215 589 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 NKPD1Q17RQ9 610 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 MESTQ5EB52 335 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 OR7E24Q6IFN5 339 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 GLDNQ6ZMI3 551 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 C16orf47Q6ZP98 133 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 TMEM151BQ8IW70 566 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 LSMEM1Q8N8F7 131 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 RBPMSQ93062 196 aaKnown RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 TAAR8Q969N4 342 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 PMEPA1Q969W9 287 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 ACTR6Q9GZN1 396 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 ATG5Q9H1Y0 275 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 FBXO4Q9UKT5 387 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 PCNX3Q9H6A9 2034 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 FOXS1O43638 330 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 KCNJ13O60928 360 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 RBBP9O75884 186 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 AK1P00568 194 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 GFERP55789 205 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SORDQ00796 357 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 TUSC1Q2TAM9 212 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SCGB2B2Q4G0G5 96 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 FAM219AQ8IW50 185 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 MUC20Q8N307 709 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 PRSS35Q8N3Z0 413 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 HGDQ93099 445 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 TSLPQ969D9 159 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 TGM7Q96PF1 710 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 TSPAN32Q96QS1 320 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 NXF5Q9H1B4 397 aaKnown RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 ANKRD20A5PA0PJZ0 165 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SOX1O00570 391 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 EIF1AYO14602 144 aaKnown RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 CCSO14618 274 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SHOXO15266 292 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 GSTZ1O43708 216 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 TNFP01375 233 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 OPN1LWP04000 364 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 LPLP06858 475 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 ITGA5P08648 1049 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 RNH1P13489 461 aaKnown RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 CTHP32929 405 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 PTGS2P35354 604 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 RBM34P42696 430 aaKnown RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 POU3F4P49335 361 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 CSRP2Q16527 193 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 ZNF74Q16587 644 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 LINC00114Q6XXX2 140 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 MARCH3Q86UD3 253 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 STPG2Q8N412 459 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 OR2G2Q8NGZ5 317 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 THAP3Q8WTV1 239 aaPredicted RBP8.28□□□□□ -1.08
MSH4-201ENST00000263187 HAVCR1Q96D42 359 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SEC22AQ96IW7 307 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 EXO5Q9H790 373 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 ELOVL3Q9HB03 270 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 SDHAF2Q9NX18 166 aa8.28□□□□□ -1.08
MSH4-201ENST00000263187 MUC3AQ02505 3323 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms