RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 HSPB2A8KAH6 182 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 ZNF732B4DXR9 585 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 HLA-AP01891 365 aaKnown RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 SMIM18P0DKX4 95 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 HSPB2Q16082 182 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 ZNF628Q5EBL2 1059 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 EMC4Q5J8M3 183 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 SFRP5Q5T4F7 317 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 LRRC18Q8N456 261 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 MORN4Q8NDC4 146 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 OR52N1Q8NH53 320 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 ZNF845Q96IR2 970 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 SAV1Q9H4B6 383 aaPredicted RBP17.64■□□□□ 0.41
UPF1-201ENST00000262803 A0A1B0GWA3 101 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 PIP5K1CO60331 668 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 CHRNB1P11230 501 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 METRNLQ641Q3 311 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 LCN10Q6JVE6 187 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 LACC1Q8IV20 430 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 TCEAL7Q9BRU2 100 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 CALHM2Q9HA72 323 aa17.64■□□□□ 0.41
UPF1-201ENST00000262803 K7EQM0 130 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 ACVR1Q04771 509 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 SMAD2Q15796 467 aaKnown RBP17.63■□□□□ 0.41
UPF1-201ENST00000262803 FAM71E1Q6IPT2 247 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 FBXW12Q6X9E4 464 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 GHSRQ92847 366 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 JAM3Q9BX67 310 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 SNX11Q9Y5W9 270 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 CHRM2P08172 466 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 LIPAP38571 399 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 SUB1P53999 127 aaKnown RBP eCLIP17.63■□□□□ 0.419e-7■■■□□ 17.7
UPF1-201ENST00000262803 C1orf140Q5VVS0 124 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 DHRS4L2Q6PKH6 230 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 SLC35A4Q96G79 324 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 KIRREL1Q96J84 757 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 KIR2DS1A0A191URI9 304 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 APEX1P27695 318 aaKnown RBP17.63■□□□□ 0.41
UPF1-201ENST00000262803 KIR2DS4P43632 304 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 KIR2DS1Q14954 304 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 RBMXL3Q8N7X1 1067 aaKnown RBP17.63■□□□□ 0.41
UPF1-201ENST00000262803 TMEM185AQ8NFB2 350 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 C11orf40Q8WZ69 217 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 UBE2FQ969M7 185 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 SDSLQ96GA7 329 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 ASB16Q96NS5 453 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 TMEM82A0PJX8 343 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 H0YIG0 161 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 CSO75390 466 aaKnown RBP17.63■□□□□ 0.41
UPF1-201ENST00000262803 TPMTP51580 245 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 RAC1P63000 192 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 ARL16Q0P5N6 197 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 OR8B8Q15620 311 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 ADPRMQ3LIE5 342 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 OR13H1Q8NG92 308 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 ABHD6Q9BV23 337 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 HRASLSQ9HDD0 168 aa17.63■□□□□ 0.41
UPF1-201ENST00000262803 RBFOX1Q9NWB1 397 aaKnown RBP17.63■□□□□ 0.41
UPF1-201ENST00000262803 TMEM72A0PK05 275 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 GLCEO94923 617 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ADH4P08319 380 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ALKBH1Q13686 389 aaKnown RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 BCDIN3DQ7Z5W3 292 aaKnown RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 NUDT22Q9BRQ3 303 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ARID1BQ8NFD5 2236 aaPredicted RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 RAB19A4D1S5 217 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ZNF749O43361 778 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 THBS1P07996 1170 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ITGB8P26012 769 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 SHC1P29353 583 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ARR3P36575 388 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 LCN6P62502 163 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ZNF674Q2M3X9 581 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 PRAMEF20Q5VT98 475 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 LYPD4Q6UWN0 246 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 DOK3Q7L591 496 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 FAM212BQ9NTI7 297 aaPredicted RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 OSGIN1Q9UJX0 560 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 PPT2Q9UMR5 302 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 APOA2P02652 100 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ZNF728P0DKX0 622 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ACHEP22303 614 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 CRMP1Q14194 572 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 CISD2Q8N5K1 135 aaKnown RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 KIAA1958Q8N8K9 716 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 GIMAP1Q8WWP7 306 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 K7EPK0 472 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 PRAMEF4O60810 478 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 TPOP07202 933 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 RPL34P49207 117 aaKnown RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 Q6ZTK2 550 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 NAXDQ8IW45 347 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 FAM71E2Q8N5Q1 922 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 LYSMD1Q96S90 227 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 UBE2ZQ9H832 354 aaPredicted RBP17.62■□□□□ 0.41
UPF1-201ENST00000262803 NECAP2Q9NVZ3 263 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 ZNF254O75437 659 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 UBL3O95164 117 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 SRFP11831 508 aa17.62■□□□□ 0.41
UPF1-201ENST00000262803 CLDN12P56749 244 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms