RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NKX6-3A6NJ46 265 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SLC22A20A6NK97 555 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 M0R082 166 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 DHRS13Q6UX07 377 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 NOXO1Q8NFA2 376 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 GRPEL2Q8TAA5 225 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 RADILQ96JH8 1075 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 A0A075B6Q4 140 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 TRGV5A0A0B4J1U4 118 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 hCG_1809904A0A1W2PP81 198 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 A0A1W2PPE2 198 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 A0A1W2PR64 198 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 A0A1W2PRV1 198 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 DUSP7Q16829 419 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 C4orf46Q504U0 113 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 PWWP2BQ6NUJ5 590 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 PXKQ7Z7A4 578 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 KIF18BQ86Y91 864 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 ARMC10Q8N2F6 343 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 PRRT1Q99946 306 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 ZNF442Q9H7R0 627 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 RHBDL2Q9NX52 303 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 ZNF346Q9UL40 294 aaKnown RBP12.44□□□□□ -0.42
LDLR-201ENST00000252444 PRSS37A4D1T9 235 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 CD8B2A6NJW9 211 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 B4DXG7 233 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 CD8BP10966 210 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 S100A7P31151 101 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 EFNA3P52797 238 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 PLCXD3Q63HM9 321 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 NUFIP2Q7Z417 695 aaKnown RBP12.44□□□□□ -0.42
LDLR-201ENST00000252444 SFTPA1Q8IWL2 248 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 SIMC1Q8NDZ2 872 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 OR5H2Q8NGV7 314 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 CMTM3Q96MX0 182 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 DYNLRB1Q9NP97 96 aa12.44□□□□□ -0.42
LDLR-201ENST00000252444 DNAJB12Q9NXW2 375 aaKnown RBP12.44□□□□□ -0.42
LDLR-201ENST00000252444 CSRP1P21291 193 aaKnown RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 HOXC5Q00444 222 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 GALNTL5Q7Z4T8 443 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 GALNT16Q8N428 558 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 CYB561A3Q8NBI2 242 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 OR6M1Q8NGM8 313 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 ARSGQ96EG1 525 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 OR5H15A6NDH6 313 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 CYCSP99999 105 aaKnown RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 SWI5Q1ZZU3 235 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 RNASE10Q5GAN6 216 aaKnown RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 ZNF517Q6ZMY9 492 aaPredicted RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 LSMEM1Q8N8F7 131 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 NPEPL1Q8NDH3 523 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 TRMT10AQ8TBZ6 339 aaKnown RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 NDRG3Q9UGV2 375 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 TPOP07202 933 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 EMX1Q04741 257 aaPredicted RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 SNRNP27Q8WVK2 155 aaKnown RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 RTL8AQ9BWD3 113 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 FAM25EA8MYX2 175 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 SGCEO43556 437 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 CALCBP10092 127 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 PSKH1P11801 424 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 LSSP48449 732 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 CRMP1Q14194 572 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 LPCAT3Q6P1A2 487 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 NPSR1Q6W5P4 371 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 SIRT6Q8N6T7 355 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 IL17RDQ8NFM7 739 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 THAP6Q8TBB0 222 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 CHPT1Q8WUD6 406 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 HPS1Q92902 700 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 VSTM2LQ96N03 204 aa12.43□□□□□ -0.42
LDLR-201ENST00000252444 SIRT3Q9NTG7 399 aaPredicted RBP12.43□□□□□ -0.42
LDLR-201ENST00000252444 TEX13DA0A0J9YY54 714 aaPredicted RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 F5H5K5 113 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 CYB5BO43169 146 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 PEX14O75381 377 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 CBX7O95931 251 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 GTF2F2P13984 249 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 ZNF74Q16587 644 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 PAQR6Q6TCH4 344 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 INO80EQ8NBZ0 244 aaPredicted RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 OR52I1Q8NGK6 324 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 ZFAND1Q8TCF1 268 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 FAM131CQ96AQ9 280 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 SLC25A44Q96H78 314 aaPredicted RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 OR14I1A6ND48 311 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 F13BP05160 661 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 ARSBP15848 533 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 PEBP1P30086 187 aaKnown RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 POU3F4P49335 361 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 IGLV3-21P80748 117 aaPredicted RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 MAB21L1Q13394 359 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 NANOGP1Q8N7R0 232 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 HIF3AQ9Y2N7 669 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 DVL2O14641 736 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 CHRM2P08172 466 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 RAD52P43351 418 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 RIN1Q13671 783 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 C12orf73Q69YU5 71 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 SPRED2Q7Z698 418 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms