RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OR11A1Q9GZK7 315 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 LHPPQ9H008 270 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ACOXLQ9NUZ1 547 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 BTNL2Q9UIR0 455 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TMED7Q9Y3B3 224 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 R4GN57 208 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 RAB3DO95716 219 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MT-ND4P03905 459 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR8G3PP0DMU2 310 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OSMP13725 252 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PRKACAP17612 351 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 HOXA11P31270 313 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 BRS3P32247 399 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 IRS1P35568 1242 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SPHARQ15513 63 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF404Q494X3 552 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 FAM199XQ6PEV8 388 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MOB3BQ86TA1 216 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF679Q8IYX0 411 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR4M1Q8NGD0 313 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF251Q9BRH9 671 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C5orf49A4QMS7 147 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SERINC4A6NH21 518 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SIAH2O43255 324 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SGCEO43556 437 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CD3EP07766 207 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C1SP09871 688 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SLC18A1P54219 525 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CDKN2DP55273 166 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 GPR85P60893 370 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MRPL2Q5T653 305 aaKnown RBP5.67□□□□□ -1.5
SCN1A-217ENST00000637988 PIP5KL1Q5T9C9 394 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF529Q6P280 563 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 CLEC2AQ6UVW9 174 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C17orf107Q6ZR85 190 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TAS1R1Q7RTX1 841 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 C15orf54Q8N8G6 183 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 MORN4Q8NDC4 146 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 OR2AK2Q8NG84 335 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM171Q8WVE6 324 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 ITPKCQ96DU7 683 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 SLCO1C1Q9NYB5 712 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 TIMM10BQ9Y5J6 103 aa5.67□□□□□ -1.5
SCN1A-217ENST00000637988 A0A1W2PS29 197 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 METTL15A6NJ78 407 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TXNL1O43396 289 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 HTR1EP28566 365 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 EVI2BP34910 448 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 AQP4P55087 323 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PAFAH1B2P68402 229 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TLE1Q04724 770 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SEMA3BQ13214 749 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 MFSD12Q6NUT3 480 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CPEB2Q7Z5Q1 589 aaKnown RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TUSC5Q8IXB3 177 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 LILRA2Q8N149 483 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ENDOVQ8N8Q3 282 aaKnown RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ZNRF4Q8WWF5 429 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ASB5Q8WWX0 329 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 BORCS6Q96GS4 357 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PCYT2Q99447 389 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 C1QTNF6Q9BXI9 259 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 IKZF5Q9H5V7 419 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 LYRM4Q9HD34 91 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF593O00488 134 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 MT-CO3P00414 261 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ORM1P02763 201 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 UBE2G1P62253 170 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ENTPD8Q5MY95 495 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 PTOV1Q86YD1 416 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TCTEX1D2Q8WW35 142 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SLCO2A1Q92959 643 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 MOB3AQ96BX8 217 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 FAM173AQ9BQD7 235 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 BEX2Q9BXY8 128 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 WWTR1Q9GZV5 400 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 ADAM19Q9H013 955 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 NARFLQ9H6Q4 476 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SIAEQ9HAT2 523 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 BEX1Q9HBH7 125 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 NECAP2Q9NVZ3 263 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 LRRC37A3O60309 1634 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SMIM30A4D0T7 59 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 NAP1L6A6NFF2 107 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 XRCC2O43543 280 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CTNSO60931 367 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TACR1P25103 407 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SOX18P35713 384 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 SOX4Q06945 474 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 OLIG2Q13516 323 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 RABL3Q5HYI8 236 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM102Q8N9M5 508 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CADM4Q8NFZ8 388 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 HPSE2Q8WWQ2 592 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 HS3ST2Q9Y278 367 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TSPAN11A1L157 253 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 TNFSF11O14788 317 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CTXN2P0C2S0 81 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 CXCR4P61073 352 aa5.66□□□□□ -1.5
SCN1A-217ENST00000637988 NKX6-1P78426 367 aaPredicted RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms