RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ADAM5Q6NVV9 412 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 ANKRD16Q6P6B7 361 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 SLC35D2Q76EJ3 337 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 CDC20BQ86Y33 519 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 KDM8Q8N371 416 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 SMURF2Q9HAU4 748 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 INIPQ9NRY2 104 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 MGAT4BQ9UQ53 548 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 SLC25A15Q9Y619 301 aa16.06■□□□□ 0.16
CLN3-259ENST00000637551 RAI1Q7Z5J4 1906 aaPredicted RBP16.06■□□□□ 0.16
CLN3-259ENST00000637551 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.05■□□□□ 0.16
CLN3-259ENST00000637551 SLC35F4A4IF30 521 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ZNF99A8MXY4 864 aaPredicted RBP16.05■□□□□ 0.16
CLN3-259ENST00000637551 ACOT8O14734 319 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 BCL10O95999 233 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 IGHV3-9P01782 118 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ATP6V1B2P21281 511 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 LOXP28300 417 aaPredicted RBP16.05■□□□□ 0.16
CLN3-259ENST00000637551 TESK1Q15569 626 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 FBXW10Q5XX13 1052 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 KLHL17Q6TDP4 642 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 KLHL24Q6TFL4 600 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 C22orf34Q6ZV56 151 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ZDHHC21Q8IVQ6 265 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 LRRC17Q8N6Y2 441 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ZNF566Q969W8 418 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 LRGUKQ96M69 825 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ALKBH3Q96Q83 286 aaPredicted RBP16.05■□□□□ 0.16
CLN3-259ENST00000637551 THTPAQ9BU02 230 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 DENND2DQ9H6A0 471 aaPredicted RBP16.05■□□□□ 0.16
CLN3-259ENST00000637551 PLEKHF2Q9H8W4 249 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 SLC17A5Q9NRA2 495 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 ITGB1BP2Q9UKP3 347 aa16.05■□□□□ 0.16
CLN3-259ENST00000637551 EFCAB9A8MZ26 197 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 BLOC1S5-TXNDC5H3BN57 136 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 SIAH2O43255 324 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 AHCYL1O43865 530 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 RAD51DO75771 328 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 GADD45GO95257 159 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 IGHG1P01857 330 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 SAGP10523 405 aaPredicted RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 HLA-DOBP13765 273 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 IFNGR1P15260 489 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 CBLP22681 906 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 PTAFRP25105 342 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 MSX2P35548 267 aaPredicted RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 YAP1P46937 504 aaKnown RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 LIMS1P48059 325 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 ZNF133P52736 654 aaPredicted RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 ROR2Q01974 943 aaKnown RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 CHRNB3Q05901 458 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 HIST3H3Q16695 136 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 NCMAPQ5T1S8 102 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 C20orf204Q6ZNR8 217 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 DPPA2Q7Z7J5 298 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 OAFQ86UD1 273 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 OR1K1Q8NGR3 316 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 GPX7Q96SL4 187 aaPredicted RBP16.04■□□□□ 0.16
CLN3-259ENST00000637551 TXNIPQ9H3M7 391 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 GPR35Q9HC97 309 aa16.04■□□□□ 0.16
CLN3-259ENST00000637551 SH3PXD2BA1X283 911 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 hCG_2039718K7EN88 272 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 CLOCKO15516 846 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 UPK3AO75631 287 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 PGA4P0DJD7 388 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 PGA3P0DJD8 388 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 RAP2AP10114 183 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 CSNK1A1P48729 337 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 MS4A2Q01362 244 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 ALG10Q5BKT4 473 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 FGD3Q5JSP0 725 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 ANKRD34AQ69YU3 496 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 PODNL1Q6PEZ8 512 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 TMEM108Q6UXF1 575 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 PAMR1Q6UXH9 720 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 SPNS3Q6ZMD2 512 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.03■□□□□ 0.16
CLN3-259ENST00000637551 CDH24Q86UP0 819 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 OR4K5Q8NGD3 323 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 TMEM54Q969K7 222 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 MBD6Q96DN6 1003 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 ALG12Q9BV10 488 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 MRPL13Q9BYD1 178 aaKnown RBP16.03■□□□□ 0.16
CLN3-259ENST00000637551 CRLF2Q9HC73 371 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 MED29Q9NX70 200 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 RHCGQ9UBD6 479 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 FBXL3Q9UKT7 428 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 NIPBLQ6KC79 2804 aaeCLIP16.03■□□□□ 0.16
CLN3-259ENST00000637551 ABCA2Q9BZC7 2435 aa16.03■□□□□ 0.16
CLN3-259ENST00000637551 A6NIZ1 184 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 C11orf98E9PRG8 122 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 PDE5AO76074 875 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 APEHP13798 732 aaKnown RBP16.02■□□□□ 0.16
CLN3-259ENST00000637551 PTNP21246 168 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 FPR3P25089 353 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 OMPP47874 163 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 BIDP55957 195 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 RAP1BP61224 184 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 RAP1AP62834 184 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 FHL1Q13642 323 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms