RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ATP6V1E1P36543 226 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 EIF1AXP47813 144 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 LHX2P50458 406 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 CARD18P57730 90 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ETFDHQ16134 617 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 C3AR1Q16581 482 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 KLHL22Q53GT1 634 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 EMC4Q5J8M3 183 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 HBMQ6B0K9 141 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 OR6K6Q8NGW6 343 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 OR10D3Q8NH80 312 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ASB10Q8WXI3 467 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 MFRPQ9BY79 579 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 NDEL1Q9GZM8 345 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 NUAK2Q9H093 628 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 DIMT1Q9UNQ2 313 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 A0A1W2PNV4 684 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ZNF99A8MXY4 864 aaPredicted RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 NPIPA5E9PKD4 350 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 J3QRE1 110 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 RAB36O95755 333 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 BCL10O95999 233 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 IGHMP01871 453 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 BIDP55957 195 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 SLC10A1Q14973 349 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 GPR141Q7Z602 305 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 SLC22A16Q86VW1 577 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ZNF511Q8NB15 262 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ROBO4Q8WZ75 1007 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 RORBQ92753 470 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 ZNF775Q96BV0 537 aaPredicted RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 NAA50Q9GZZ1 169 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 RBM38Q9H0Z9 239 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 ADGRL4Q9HBW9 690 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 FGF20Q9NP95 211 aaPredicted RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 DKK4Q9UBT3 224 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 WARS2Q9UGM6 360 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 NPIPA1Q9UND3 350 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 EXOGQ9Y2C4 368 aaKnown RBP17.96■□□□□ 0.47
CLN3-250ENST00000636839 CEPT1Q9Y6K0 416 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 DNAJC13O75165 2243 aa17.96■□□□□ 0.47
CLN3-250ENST00000636839 TRAV17A0A0B4J275 112 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 PRSS37A4D1T9 235 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 GJE1A6NN92 205 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 K7ENP7 123 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 XKRYO14609 159 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 TRAF3IP2O43734 574 aaPredicted RBP17.95■□□□□ 0.46
CLN3-250ENST00000636839 MRPS14O60783 128 aaKnown RBP17.95■□□□□ 0.46
CLN3-250ENST00000636839 PSMB9P28065 219 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 LINC01590Q5TEZ4 76 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 OR2G6Q5TZ20 316 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 INO80CQ6PI98 192 aaPredicted RBP17.95■□□□□ 0.46
CLN3-250ENST00000636839 FAM109AQ8N4B1 249 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 SVOPQ8N4V2 548 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 OR13F1Q8NGS4 319 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 EXTL1Q92935 676 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 ZNF649Q9BS31 505 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 VCX3AQ9NNX9 186 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 FANCFQ9NPI8 374 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 CACNA1GO43497 2377 aa17.95■□□□□ 0.46
CLN3-250ENST00000636839 SLC22A31A6NKX4 558 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 SMAD9O15198 467 aaKnown RBP17.94■□□□□ 0.46
CLN3-250ENST00000636839 RRP8O43159 456 aaKnown RBP17.94■□□□□ 0.46
CLN3-250ENST00000636839 SEC14L2O76054 403 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 LIMS3P0CW19 117 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 LIMS4P0CW20 117 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 NAA10P41227 235 aaPredicted RBP17.94■□□□□ 0.46
CLN3-250ENST00000636839 CLDN18P56856 261 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 FMODQ06828 376 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 TBCEQ15813 527 aaPredicted RBP17.94■□□□□ 0.46
CLN3-250ENST00000636839 ESPNLQ6ZVH7 1005 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 UEVLDQ8IX04 471 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 ZADH2Q8N4Q0 377 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 RFLNBQ8N5W9 214 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 OR2V1Q8NHB1 315 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 IGKV1D-43A0A0B4J1Z2 117 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 SLC22A23A1A5C7 686 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 VGLL3A8MV65 326 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 C1QTNF9BB2RNN3 333 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 SELENOFO60613 162 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 C1QTNF9P0C862 333 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 DCKP27707 260 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 SLC25A1P53007 311 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 RAC3P60763 192 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 CSNK2A1P68400 391 aaPredicted RBP17.94■□□□□ 0.46
CLN3-250ENST00000636839 PON3Q15166 354 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 UBE2UQ5VVX9 321 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 GPR107Q5VW38 600 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 ADPRHL1Q8NDY3 354 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 OXGR1Q96P68 337 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 ALG12Q9BV10 488 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 LUZP4Q9P127 313 aa17.94■□□□□ 0.46
CLN3-250ENST00000636839 TVP23AA6NH52 213 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TAF4O00268 1085 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TFP02787 698 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 SBK2P0C263 348 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 HSMCR30P0CW71 290 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 CTLA4P16410 223 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 AGFG1P52594 562 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 CAMK2DQ13557 499 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms