RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 OR2T1O43869 369 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 DEAF1O75398 565 aaPredicted RBP12.53□□□□□ -0.4
PNKP-218ENST00000625299 SERPINI2O75830 405 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 UBL3O95164 117 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 KRT75O95678 551 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 IGHV2-5P01817 119 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 PATE4P0C8F1 98 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 MYZAPP0CAP1 466 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 HLA-DOBP13765 273 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 LBPP18428 481 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 SELENOVP59797 346 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 FAM69AQ5T7M9 428 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 H1FNTQ75WM6 255 aaPredicted RBP12.53□□□□□ -0.4
PNKP-218ENST00000625299 NUDCD3Q8IVD9 361 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 MIER2Q8N344 545 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 SIGLECL1Q8N7X8 197 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 ICA1LQ8NDH6 482 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 SLC38A4Q969I6 547 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 FOXB1Q99853 325 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 SPATA9Q9BWV2 254 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 NUF2Q9BZD4 464 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 UNKLQ9H9P5 680 aaKnown RBP12.53□□□□□ -0.4
PNKP-218ENST00000625299 HINT3Q9NQE9 182 aaKnown RBP12.53□□□□□ -0.4
PNKP-218ENST00000625299 MED29Q9NX70 200 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 ZNF224Q9NZL3 707 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 GPR160Q9UJ42 338 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 ZNF232Q9UNY5 417 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 CHST2Q9Y4C5 530 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 WIPI2Q9Y4P8 454 aa12.53□□□□□ -0.4
PNKP-218ENST00000625299 IGHV1-69-2A0A0G2JMI3 117 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 CLDN25C9JDP6 229 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 HPRP00739 348 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 ZFP36P26651 326 aaKnown RBP12.52□□□□□ -0.41
PNKP-218ENST00000625299 KLF3P57682 345 aaPredicted RBP12.52□□□□□ -0.41
PNKP-218ENST00000625299 DSTNP60981 165 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 LCN2P80188 198 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 GLO1Q04760 184 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 CAMK2DQ13557 499 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 USP51Q70EK9 711 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 SLC38A5Q8WUX1 472 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 TMEM19Q96HH6 336 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 TXNDC15Q96J42 360 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 GAL3ST1Q99999 423 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 DECR2Q9NUI1 292 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 PRDM4Q9UKN5 801 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 CACNG2Q9Y698 323 aa12.52□□□□□ -0.41
PNKP-218ENST00000625299 A0A0G2JK05 382 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 ISPDA4D126 451 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 DNAJC9-AS1A6NH13 148 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 ZNF726A6NNF4 738 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 RFXANKO14593 260 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 LCKP06239 509 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 CCL2P13500 99 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 IL12AP29459 219 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 CRYBB2P43320 205 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 ABCE1P61221 599 aaKnown RBP12.51□□□□□ -0.41
PNKP-218ENST00000625299 ERVS71-1P61550 626 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 TEKQ02763 1124 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 RBBP4Q09028 425 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 TSTQ16762 297 aaKnown RBP12.51□□□□□ -0.41
PNKP-218ENST00000625299 PCGF3Q3KNV8 242 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 SNX32Q86XE0 403 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 TREML1Q86YW5 311 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 ZNF584Q8IVC4 421 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 WDFY1Q8IWB7 410 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 SYNPRQ8TBG9 265 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 GTF3AQ92664 365 aaKnown RBP12.51□□□□□ -0.41
PNKP-218ENST00000625299 TIMD4Q96H15 378 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 DENND2DQ9H6A0 471 aaPredicted RBP12.51□□□□□ -0.41
PNKP-218ENST00000625299 SLC6A13Q9NSD5 602 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 OPN4Q9UHM6 478 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 FBXL3Q9UKT7 428 aa12.51□□□□□ -0.41
PNKP-218ENST00000625299 IGKV1D-42A0A075B6H8 117 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 TRAV36DV7A0A075B6V5 113 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 A0A087WUJ7 227 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 TMEM247A6NEH6 219 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 MS4A18H0YCH9 400 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ANP32DO95626 131 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ALDOCP09972 364 aaKnown RBP12.5□□□□□ -0.41
PNKP-218ENST00000625299 GATA3P23771 443 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 PRTN3P24158 256 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 CSNK1A1P48729 337 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 RPL14P50914 215 aaKnown RBP12.5□□□□□ -0.41
PNKP-218ENST00000625299 HFEQ30201 348 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 MS4A18Q3C1V0 323 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ARMCX4Q5H9R4 360 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ZNF627Q7L945 461 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 RETREG3Q86VR2 466 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 SKA3Q8IX90 412 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 PAQR4Q8N4S7 273 aaPredicted RBP12.5□□□□□ -0.41
PNKP-218ENST00000625299 LRRC17Q8N6Y2 441 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 SLC30A7Q8NEW0 376 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 FGFBP3Q8TAT2 258 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 RAB1CQ92928 201 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 LRR1Q96L50 414 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ZBTB18Q99592 522 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 ASPNQ9BXN1 380 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 SAP30LQ9HAJ7 183 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 CDH20Q9HBT6 801 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 AIG1Q9NVV5 245 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms