RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 STEAP1BQ6NZ63 245 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 TICRRQ7Z2Z1 1910 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 BIVMQ86UB2 503 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 C12orf40Q86WS4 652 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 LURAP1LQ8IV03 231 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 CCDC107Q8WV48 283 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 PHYHIPLQ96FC7 376 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.87□□□□□ -0.35
LDB3-209ENST00000623056 STEAP1Q9UHE8 339 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 FBXL21Q9UKT6 434 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 OR10H1Q9Y4A9 318 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 HCFC2Q9Y5Z7 792 aa12.87□□□□□ -0.35
LDB3-209ENST00000623056 TRBV5-5A0A0J9YX44 114 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 RAB19A4D1S5 217 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 NARSO43776 548 aaKnown RBP12.86□□□□□ -0.35
LDB3-209ENST00000623056 MOSPD3O75425 235 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 RFC3P40938 356 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 SNTB1Q13884 538 aaKnown RBP12.86□□□□□ -0.35
LDB3-209ENST00000623056 IRF4Q15306 451 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 MICBQ29980 383 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 FNDC3BQ53EP0 1204 aaKnown RBP12.86□□□□□ -0.35
LDB3-209ENST00000623056 ALG10BQ5I7T1 473 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 SLC35D3Q5M8T2 416 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 EXOSC6Q5RKV6 272 aaKnown RBP12.86□□□□□ -0.35
LDB3-209ENST00000623056 SLC6A19Q695T7 634 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 TMED4Q7Z7H5 227 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 ZAR1Q86SH2 424 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 ARMC10Q8N2F6 343 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 ZNF614Q8N883 585 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 CLEC1AQ8NC01 280 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 CCDC74AQ96AQ1 378 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 NMNAT2Q9BZQ4 307 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 ZNF304Q9HCX3 659 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 DUSP22Q9NRW4 184 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 ASF1BQ9NVP2 202 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 FRRS1LQ9P0K9 344 aa12.86□□□□□ -0.35
LDB3-209ENST00000623056 TMEM82A0PJX8 343 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR52A4PA6NMU1 304 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 SMAD9O15198 467 aaKnown RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 DNAJB6O75190 326 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 UPK3AO75631 287 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 CPMP14384 443 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 SCAND1P57086 179 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 ALKBH1Q13686 389 aaKnown RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 GXYLT1Q4G148 440 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 VN1R4Q7Z5H5 301 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 SAMD14Q8IZD0 417 aaPredicted RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 KREMEN2Q8NCW0 462 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR5M8Q8NGP6 311 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 GAL3ST3Q96A11 431 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 RASD2Q96D21 266 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 MYADMQ96S97 322 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 RAB11FIP5Q9BXF6 653 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 ZNF346Q9UL40 294 aaKnown RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 KCNK6Q9Y257 313 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 KLHDC2Q9Y2U9 406 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 SCN2AQ99250 2005 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 ARPC4-TTLL3A0A0A6YYG9 625 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 A0A1B0GTH9 108 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 A0A1B0GTI1 187 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 RNF222A6NCQ9 220 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR2W5A6NFC9 320 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 BRINP1O60477 761 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 LDB3O75112 727 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 PRSS3P35030 304 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 LRRC37A5PQ49AS3 106 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 TCEAL5Q5H9L2 206 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 LINC01590Q5TEZ4 76 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 LIPNQ5VXI9 398 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 DHRS7BQ6IAN0 325 aaPredicted RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 C11orf87Q6NUJ2 197 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 FAM220AQ7Z4H9 259 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 GABRG1Q8N1C3 465 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR1M1Q8NGA1 313 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR51D1Q8NGF3 324 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 EDAQ92838 391 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 WNT2BQ93097 391 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 KCNK15Q9H427 330 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 SFXN1Q9H9B4 322 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 RXFP3Q9NSD7 469 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 UPB1Q9UBR1 384 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 MRM2Q9UI43 246 aaKnown RBP12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR1A2Q9Y585 309 aa12.85□□□□□ -0.35
LDB3-209ENST00000623056 OR14I1A6ND48 311 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 PRRT4C9JH25 899 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 H3BSH0 61 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 GLCEO94923 617 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 MELTFP08582 738 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 SLC25A4P12235 298 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 LAG3P18627 525 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 GABRA3P34903 492 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 DLSTP36957 453 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 ACAA2P42765 397 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 EMDP50402 254 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 ATXN7L3Q14CW9 347 aaPredicted RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 DHCR24Q15392 516 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 TAF13Q15543 124 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 HNRNPA1L2Q32P51 320 aaKnown RBP12.84□□□□□ -0.35
LDB3-209ENST00000623056 ZNF425Q6IV72 752 aa12.84□□□□□ -0.35
LDB3-209ENST00000623056 LILRA6Q6PI73 481 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms