RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MICU1Q9BPX6 476 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 CEP250Q9BV73 2442 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 G3V3Y1 287 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SURF4O15260 269 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 BLVRBP30043 206 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ADPRHP54922 357 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 FOXK1P85037 733 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 PLCXD3Q63HM9 321 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 OR56B1Q8NGI3 324 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SLAMF9Q96A28 289 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 GPR55Q9Y2T6 319 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 TIMM8BQ9Y5J9 83 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 SIX6O95475 246 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 PPP3CBP16298 524 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 APLNRP35414 380 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ATP1B3P54709 279 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 RPS18P62269 152 aaKnown RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 GPR176Q14439 515 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF454Q8N9F8 522 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 OR4D6Q8NGJ1 314 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 DUSP23Q9BVJ7 150 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 TSPAN10Q9H1Z9 355 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-212ENST00000616140 CMC2Q9NRP2 79 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 ACOXLQ9NUZ1 547 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 NDUFB11Q9NX14 153 aa12.9□□□□□ -0.34
CPSF1-212ENST00000616140 PPM1DO15297 605 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 ACTL6BO94805 426 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 CLDN17P56750 224 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 YOD1Q5VVQ6 348 aaPredicted RBP12.9□□□□□ -0.35
CPSF1-212ENST00000616140 KCNG3Q8TAE7 436 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 STACQ99469 402 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 OR52A5Q9H2C5 316 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 MUTYHQ9UIF7 546 aa12.9□□□□□ -0.35
CPSF1-212ENST00000616140 SMCHD1A6NHR9 2005 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 SCN1AP35498 2009 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 A0A0D9SG52 128 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 A0A1W2PS29 197 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 C2orf72A6NCS6 295 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TLCD2A6NGC4 264 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ANKRD30BLA7E2S9 258 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MAGEB4O15481 346 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TPMTP51580 245 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 B4GALNT1Q00973 533 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MFAP5Q13361 173 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 PARM1Q6UWI2 310 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 C5orf46Q6UWT4 87 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 RFPL4BQ6ZWI9 263 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 OR10K1Q8NGX5 313 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MIB2Q96AX9 1013 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF845Q96IR2 970 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF578Q96N58 590 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 OPALINQ96PE5 141 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 DCLRE1CQ96SD1 692 aaKnown RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 LYRM4Q9HD34 91 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MRPS28Q9Y2Q9 187 aaKnown RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 A0A0B4J2A0 478 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 FITM1A5D6W6 292 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ANKRD61A6NGH8 418 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 CD300LBA8K4G0 201 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 A8MVM7 634 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 C1QAP02745 245 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TK1P04183 234 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 THBS1P07996 1170 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 PRR35P0CG20 571 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 FCGR2AP12318 317 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 BSGP35613 385 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 HTR5AP47898 357 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 HCCSP53701 268 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 FGL2Q14314 439 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 CREB3L2Q70SY1 520 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 SLC16A14Q7RTX9 510 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MARCH3Q86UD3 253 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 RNF128Q8TEB7 428 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 FGGYQ96C11 551 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 DDOQ99489 341 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 B3GNT2Q9NY97 397 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 SHPKQ9UHJ6 478 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 OR5K3A6NET4 321 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 SLC2A1P11166 492 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 DDOSTP39656 456 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TGM4P49221 684 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF136P52737 540 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 HSD17B7P56937 341 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TAS2R46P59540 309 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 KIAA1024LP59773 190 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 RPS27AP62979 156 aaKnown RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 UBA52P62987 128 aaKnown RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 TGFBR3Q03167 851 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ASAH1Q13510 395 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 NKAIN2Q5VXU1 208 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 MOB3CQ70IA8 216 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 OR9K2Q8NGE7 335 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ZFAND1Q8TCF1 268 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 PKMYT1Q99640 499 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 SLC38A1Q9H2H9 487 aa12.89□□□□□ -0.35
CPSF1-212ENST00000616140 WSB2Q9NYS7 404 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-212ENST00000616140 ASPDHA6ND91 283 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 ZNF93P35789 620 aaPredicted RBP12.88□□□□□ -0.35
CPSF1-212ENST00000616140 STK11Q15831 433 aa12.88□□□□□ -0.35
CPSF1-212ENST00000616140 DHRS4L2Q6PKH6 230 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms