RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 IFNGR1P15260 489 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 DCKP27707 260 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 RAC3P60763 192 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 PMP22Q01453 160 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 POU3F1Q03052 451 aaPredicted RBP12.75□□□□□ -0.37
USP39-220ENST00000613444 SLC35D2Q76EJ3 337 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 ADCK1Q86TW2 530 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 OR13F1Q8NGS4 319 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 DCBLD2Q96PD2 775 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 UCN2Q96RP3 112 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 TUBA1CQ9BQE3 449 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 RPRD1BQ9NQG5 326 aaKnown RBP12.75□□□□□ -0.37
USP39-220ENST00000613444 VSX1Q9NZR4 365 aaPredicted RBP12.75□□□□□ -0.37
USP39-220ENST00000613444 LIPGQ9Y5X9 500 aa12.75□□□□□ -0.37
USP39-220ENST00000613444 PRSS37A4D1T9 235 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 K7EM74 188 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 M0R3G1 203 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 EIF1AYO14602 144 aaKnown RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 DNPH1O43598 174 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 EIF1BO60739 113 aaKnown RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 RAB36O95755 333 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 ITGB2P05107 769 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 POU3F2P20265 443 aaPredicted RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 CLDN18P56856 261 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 CSNK2A1P68400 391 aaPredicted RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 GGTLC2Q14390 218 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 SYT6Q5T7P8 510 aaPredicted RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 OR6V1Q8N148 313 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 OR51L1Q8NGJ5 315 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 OXGR1Q96P68 337 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 ADGRL4Q9HBW9 690 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 VCX3AQ9NNX9 186 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 MED29Q9NX70 200 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 LSM2Q9Y333 95 aaKnown RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 NOX1Q9Y5S8 564 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 IRGMA1A4Y4 181 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 ZNF99A8MXY4 864 aaPredicted RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 RRP8O43159 456 aaKnown RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 SEC14L5O43304 696 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 LIMS3P0CW19 117 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 LIMS4P0CW20 117 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 ENPP1P22413 925 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 ETV1P50549 477 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 DAP3P51398 398 aaKnown RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 SLC10A1Q14973 349 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 SLC35D3Q5M8T2 416 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 PM20D2Q8IYS1 436 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 UBQLNLQ8IYU4 475 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 OR51G2Q8NGK0 314 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 OR10D3Q8NH80 312 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 OR2V1Q8NHB1 315 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 C9orf43Q8TAL5 461 aaPredicted RBP12.74□□□□□ -0.37
USP39-220ENST00000613444 JAM3Q9BX67 310 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 SYT4Q9H2B2 425 aa12.74□□□□□ -0.37
USP39-220ENST00000613444 IGHV3-15A0A0B4J1V0 119 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 SMIM31A0A1B0GVY4 71 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 SLC22A23A1A5C7 686 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 SMAD9O15198 467 aaKnown RBP12.73□□□□□ -0.37
USP39-220ENST00000613444 BCL10O95999 233 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 SBK2P0C263 348 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ZNF708P17019 499 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 CARD18P57730 90 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 RPS7P62081 194 aaKnown RBP12.73□□□□□ -0.37
USP39-220ENST00000613444 POU4F3Q15319 338 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 EEF1A1P5Q5VTE0 462 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 HBMQ6B0K9 141 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 TMEM225Q6GV28 225 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 BORAQ6PGQ7 559 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 UEVLDQ8IX04 471 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ZADH2Q8N4Q0 377 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 NANOGP1Q8N7R0 232 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 RORBQ92753 470 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ZMYND19Q96E35 227 aaPredicted RBP12.73□□□□□ -0.37
USP39-220ENST00000613444 OR5M11Q96RB7 305 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 KCNK17Q96T54 332 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 KLHL13Q9P2N7 655 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 RASD1Q9Y272 281 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 RAXQ9Y2V3 346 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 CEPT1Q9Y6K0 416 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 NPIPA5E9PKD4 350 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 H3BSA7 217 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ACOT7O00154 380 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 XKRYO14609 159 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 GLCEO94923 617 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 PYCR1P32322 319 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 SLC16A1P53985 500 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 LYPD4Q6UWN0 246 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 Q6ZS92 163 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 GPR141Q7Z602 305 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 GPAT4Q86UL3 456 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ZBTB46Q86UZ6 589 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 TM9SF4Q92544 642 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 FCGR1BQ92637 280 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 TIMP4Q99727 224 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 MRPL13Q9BYD1 178 aaKnown RBP12.73□□□□□ -0.37
USP39-220ENST00000613444 FAM192AQ9GZU8 254 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 NUAK2Q9H093 628 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 DEFB127Q9H1M4 99 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 TSPAN10Q9H1Z9 355 aaPredicted RBP12.73□□□□□ -0.37
USP39-220ENST00000613444 TNFRSF10DQ9UBN6 386 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms