RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NKPD1Q17RQ9 610 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 NUDT18Q6ZVK8 323 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 BEST3Q8N1M1 668 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 TSNAXQ99598 290 aaKnown RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 TMEM231Q9H6L2 316 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 PLEKHA1Q9HB21 404 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 ASF1BQ9NVP2 202 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 PLEKHA6Q9Y2H5 1048 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 A0A1W2PP55 124 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 F13BP05160 661 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 PVRP15151 417 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 DHODHQ02127 395 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 POU4F2Q12837 409 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 SQSTM1Q13501 440 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 RPL13AP3Q6NVV1 102 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 POMZP3Q6PJE2 187 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 OR5AK2Q8NH90 309 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 NKD1Q969G9 470 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 TMEM106AQ96A25 262 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 RPP25Q9BUL9 199 aaKnown RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 SLC6A15Q9H2J7 730 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 THAP10Q9P2Z0 257 aaPredicted RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 GLS2Q9UI32 602 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 CTNSO60931 367 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 ATG12O94817 140 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 NDUFB2O95178 105 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 EML2O95834 649 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 TYRP1P17643 537 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 UBE2IP63279 158 aaKnown RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 TNFRSF17Q02223 184 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 IRF4Q15306 451 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 AGBL4Q5VU57 503 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 KIRREL2Q6UWL6 708 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 ZNF627Q7L945 461 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 SLC36A1Q7Z2H8 476 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 HSD17B13Q7Z5P4 300 aaPredicted RBP16.73■□□□□ 0.27
UPF1-210ENST00000600689 FAM219AQ8IW50 185 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 PPP1R14AQ96A00 147 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 C12orf57Q99622 126 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 GMEB2Q9UKD1 530 aa16.73■□□□□ 0.27
UPF1-210ENST00000600689 SNRPGP15A8MWD9 76 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 SLC31A1O15431 190 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 SEC13P55735 322 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 OLFML2AQ68BL7 652 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 LRRC69Q6ZNQ3 347 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 OR2L8Q8NGY9 312 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 MIB2Q96AX9 1013 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 HDAC8Q9BY41 377 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 SLC6A17Q9H1V8 727 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 YBX2Q9Y2T7 364 aaKnown RBP16.72■□□□□ 0.27
UPF1-210ENST00000600689 ZNF337Q9Y3M9 751 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 ZNF98A6NK75 572 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 H7C2Y5 167 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 LDOC1O95751 146 aaPredicted RBP16.72■□□□□ 0.27
UPF1-210ENST00000600689 FAUP35544 74 aaKnown RBP16.72■□□□□ 0.27
UPF1-210ENST00000600689 GAS6Q14393 721 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 UBXN2BQ14CS0 331 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 PELOQ9BRX2 385 aaKnown RBP16.72■□□□□ 0.27
UPF1-210ENST00000600689 ALG12Q9BV10 488 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 CHRNA9Q9UGM1 479 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 ZNF175Q9Y473 711 aa16.72■□□□□ 0.27
UPF1-210ENST00000600689 LINC01387J3KSC0 135 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 GLSO94925 669 aaPredicted RBP16.71■□□□□ 0.27
UPF1-210ENST00000600689 TLX1P31314 330 aaPredicted RBP16.71■□□□□ 0.27
UPF1-210ENST00000600689 DIO1P49895 249 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 SERTAD2Q14140 314 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 C2orf27AQ580R0 203 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 FAM220AQ7Z4H9 259 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 SYS1Q8N2H4 156 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 LMAN2LQ9H0V9 348 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 ATG5Q9H1Y0 275 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 PRELID3BQ9Y3B1 194 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 DOCK8Q8NF50 2099 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 IL5P05113 134 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 SLC35G6P0C7Q6 338 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 AQP2P41181 271 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 GUCA2BQ16661 112 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 TMEM205Q6UW68 189 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 STEAP2Q8NFT2 490 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 OR6N2Q8NGY6 317 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 TSEN15Q8WW01 171 aaKnown RBP16.71■□□□□ 0.27
UPF1-210ENST00000600689 TMPRSS13Q9BYE2 586 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 SFXN1Q9H9B4 322 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 RXFP3Q9NSD7 469 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 FRRS1LQ9P0K9 344 aa16.71■□□□□ 0.27
UPF1-210ENST00000600689 NOP16Q9Y3C1 178 aaKnown RBP16.71■□□□□ 0.27
UPF1-210ENST00000600689 A0A0B4J2E0 115 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 A0A1B0GX12 115 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 OR6C65A6NJZ3 312 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 ELOA3DA6NLF2 546 aaPredicted RBP16.71■□□□□ 0.26
UPF1-210ENST00000600689 LINC01565O15544 149 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 THBS1P07996 1170 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 FHL1Q13642 323 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 CST6Q15828 149 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 ELOA3BQ3SY89 546 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 OR10K2Q6IF99 312 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 HAGHLQ6PII5 290 aaPredicted RBP16.71■□□□□ 0.26
UPF1-210ENST00000600689 ADAMTSL4Q6UY14 1074 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 DGAT2L6Q6ZPD8 337 aa16.71■□□□□ 0.26
UPF1-210ENST00000600689 MFSD9Q8NBP5 474 aa16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms