RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 KBTBD8Q8NFY9 601 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 OR6X1Q8NH79 312 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 IGFBPL1Q8WX77 278 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 ACOT11Q8WXI4 607 aaPredicted RBP9.75□□□□□ -0.85
VRK3-210ENST00000596121 HIST1H2ACQ93077 130 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 MUCL1Q96DR8 90 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 LRR1Q96L50 414 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 TNFRSF13CQ96RJ3 184 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 GPA33Q99795 319 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 C1orf21Q9H246 121 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 UBTD1Q9HAC8 227 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 ACTR3BQ9P1U1 418 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 CELSR1Q9NYQ6 3014 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 HIVEP1P15822 2718 aa9.75□□□□□ -0.85
VRK3-210ENST00000596121 TRAV27A0A087WT01 109 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 ZNF726A6NNF4 738 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 ACOT8O14734 319 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 CLOCKO15516 846 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 GMNNO75496 209 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 RAF1P04049 648 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 H1F0P07305 194 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 PGA4P0DJD7 388 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 PGA3P0DJD8 388 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 RHCEP18577 417 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 GPR4P46093 362 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 NR1H2P55055 460 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 TRIM25Q14258 630 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 ARMC4Q5T2S8 1044 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 HMBOX1Q6NT76 420 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 ADAM5Q6NVV9 412 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 PGM2L1Q6PCE3 622 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 ZNF730Q6ZMV8 503 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 TMPRSS11FQ6ZWK6 438 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 MYPOPQ86VE0 399 aaPredicted RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 IGFN1Q86VF2 1251 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 CYP4Z1Q86W10 505 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 RNF113BQ8IZP6 322 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 C17orf78Q8N4C9 275 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 OR13C2Q8NGS9 318 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 OR52J3Q8NH60 311 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 OR51A7Q8NH64 312 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 AKAP1Q92667 903 aaKnown RBP eCLIP9.74□□□□□ -0.85
VRK3-210ENST00000596121 NINJ1Q92982 152 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 NMD3Q96D46 503 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 SEPHS2Q99611 448 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 PIP5K1AQ99755 562 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 MRPL13Q9BYD1 178 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 ESRP2Q9H6T0 727 aaKnown RBP9.74□□□□□ -0.85
VRK3-210ENST00000596121 SEC61A2Q9H9S3 476 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 NOX3Q9HBY0 568 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 IL1RAPQ9NPH3 570 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 INIPQ9NRY2 104 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 HIF3AQ9Y2N7 669 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 RNF115Q9Y4L5 304 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 PLCE1Q9P212 2302 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 USF3Q68DE3 2245 aa9.74□□□□□ -0.85
VRK3-210ENST00000596121 TEP1Q99973 2627 aaKnown RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 ITPR3Q14573 2671 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 VPS13CQ709C8 3753 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ARPC4-TTLL3A0A0A6YYG9 625 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ZNF99A8MXY4 864 aaPredicted RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 EFCAB9A8MZ26 197 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 M0R1B8 84 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 HS3ST1O14792 307 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 PTP4A3O75365 173 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 CD3EP07766 207 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 DNASE1P24855 282 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 CD40P25942 277 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 IFNA8P32881 189 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 OMPP47874 163 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 LIMS1P48059 325 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 CSNK1A1P48729 337 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ART1P52961 327 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 FXYD6P3P58550 94 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 PRPS1P60891 318 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 TGFBR3Q03167 851 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 HIST3H3Q16695 136 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 LCN8Q6JVE9 175 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ANKRD16Q6P6B7 361 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 B3GLCTQ6Y288 498 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 PIWIL3Q7Z3Z3 882 aaKnown RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 ABHD12BQ7Z5M8 362 aaPredicted RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 KRTAP1-3Q8IUG1 177 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ARHGAP24Q8N264 748 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 CLDN22Q8N7P3 220 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 OR4K5Q8NGD3 323 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 OR6N1Q8NGY5 312 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 FGFBP3Q8TAT2 258 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 MAGEE2Q8TD90 523 aaPredicted RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 ASB10Q8WXI3 467 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 HTRA1Q92743 480 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 HDAC2Q92769 488 aaKnown RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 MBD6Q96DN6 1003 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 FAM46AQ96IP4 442 aaKnown RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 ADAD1Q96M93 576 aaKnown RBP9.73□□□□□ -0.85
VRK3-210ENST00000596121 ZNF347Q96SE7 839 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 THTPAQ9BU02 230 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 CXXC4Q9H2H0 198 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 ANKRD19PQ9H560 264 aa9.73□□□□□ -0.85
VRK3-210ENST00000596121 NGBQ9NPG2 151 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms