RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SLC25A44Q96H78 314 aaPredicted RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 CLPTM1LQ96KA5 538 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 DHRS1Q96LJ7 313 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 SEPHS2Q99611 448 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 MAGIXQ9H6Y5 334 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 CRLF2Q9HC73 371 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 GPR35Q9HC97 309 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 OBP2BQ9NPH6 170 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 STX18Q9P2W9 335 aaKnown RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 MAGED1Q9Y5V3 778 aaPredicted RBP13.19□□□□□ -0.3
UPF1-202ENST00000594243 SLC25A15Q9Y619 301 aa13.19□□□□□ -0.3
UPF1-202ENST00000594243 TCRBV5S2A0A599 114 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 MCIDASD6RGH6 385 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 CLOCKO15516 846 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 KRT36O76013 467 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 CD3EP07766 207 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 LOXP28300 417 aaPredicted RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 CSNK1A1P48729 337 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 DAP3P51398 398 aaKnown RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 UBE2NP61088 152 aaKnown RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 SPIBQ01892 262 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 TAF11Q15544 211 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 CEACAM16Q2WEN9 425 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 FAM98BQ52LJ0 330 aaKnown RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 WDR31Q8NA23 367 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 OR52J3Q8NH60 311 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 OR51A7Q8NH64 312 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 MAGEE2Q8TD90 523 aaPredicted RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 NINJ1Q92982 152 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 CCDC124Q96CT7 223 aaKnown RBP13.18□□□□□ -0.3
UPF1-202ENST00000594243 HS3ST6Q96QI5 342 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 ULBP2Q9BZM5 246 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 TRIM15Q9C019 465 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 TMCC3Q9ULS5 477 aa13.18□□□□□ -0.3
UPF1-202ENST00000594243 A0A1W2PR80 420 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 NPIPB13A6NJU9 1138 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 ZNF99A8MXY4 864 aaPredicted RBP13.17□□□□□ -0.3
UPF1-202ENST00000594243 CENPBD1B2RD01 187 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 NPIPB4C9JG80 1138 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 ACOT8O14734 319 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 GSC2O15499 205 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 IGHG1P01857 330 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 PTAFRP25105 342 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 RRM2P31350 389 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 RPS4XP62701 263 aaKnown RBP13.17□□□□□ -0.3
UPF1-202ENST00000594243 ARF1P84077 181 aaKnown RBP13.17□□□□□ -0.3
UPF1-202ENST00000594243 CHRNB3Q05901 458 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 MELKQ14680 651 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 ZBED5Q49AG3 693 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 PHYHD1Q5SRE7 291 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 PGM2L1Q6PCE3 622 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 TMEM108Q6UXF1 575 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 CCDC36Q8IYA8 594 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 OR4K5Q8NGD3 323 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 MOSPD2Q8NHP6 518 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 NRGNQ92686 78 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 BCL2L2Q92843 193 aaPredicted RBP13.17□□□□□ -0.3
UPF1-202ENST00000594243 TMEM54Q969K7 222 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 RADILQ96JH8 1075 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 ALPK1Q96QP1 1244 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 TNFRSF13CQ96RJ3 184 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 TMEM204Q9BSN7 226 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 NDEL1Q9GZM8 345 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 TXNIPQ9H3M7 391 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 LIME1Q9H400 295 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 MOV10Q9HCE1 1003 aaKnown RBP13.17□□□□□ -0.3
UPF1-202ENST00000594243 GLTPQ9NZD2 209 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 ST6GALNAC2Q9UJ37 374 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 MGAT4BQ9UQ53 548 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 AURKCQ9UQB9 309 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 POFUT2Q9Y2G5 429 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 RNF115Q9Y4L5 304 aa13.17□□□□□ -0.3
UPF1-202ENST00000594243 PKDREJQ9NTG1 2253 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 TRBV4-1A0A0J9YWV2 114 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 A0A1W2PPR1 153 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 SH3PXD2BA1X283 911 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 DPRXA6NFQ7 191 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 PGA4P0DJD7 388 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 PGA3P0DJD8 388 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 ACADSP16219 412 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 HOXB6P17509 224 aaKnown RBP13.16□□□□□ -0.3
UPF1-202ENST00000594243 DNASE1P24855 282 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 IFNGR2P38484 337 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 MAGEA2P43356 314 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 GPR4P46093 362 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 OMPP47874 163 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 CLRN1P58418 232 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 CTXN1P60606 82 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 BSPH1Q075Z2 132 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 KEAP1Q14145 624 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 ACKR1Q16570 336 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 TBRG1Q3YBR2 411 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 HIKESHIQ53FT3 197 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 SEZ6L2Q6UXD5 910 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 ZNF704Q6ZNC4 412 aaPredicted RBP13.16□□□□□ -0.3
UPF1-202ENST00000594243 ASB10Q8WXI3 467 aa13.16□□□□□ -0.3
UPF1-202ENST00000594243 ZNF837Q96EG3 531 aaPredicted RBP13.16□□□□□ -0.3
UPF1-202ENST00000594243 FAM46AQ96IP4 442 aaKnown RBP13.16□□□□□ -0.3
UPF1-202ENST00000594243 FBN2P35556 2912 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 DCHS2Q6V1P9 2916 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms