RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 GTF3C1Q12789 2109 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 PRRC2AP48634 2157 aaKnown RBP9.19□□□□□ -0.94
SS18-221ENST00000582448 IRGMA1A4Y4 181 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 EFCAB10A6NFE3 127 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 WWP2O00308 870 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 KPNA4O00629 521 aaPredicted RBP9.19□□□□□ -0.94
SS18-221ENST00000582448 PRKNO60260 465 aaPredicted RBP9.19□□□□□ -0.94
SS18-221ENST00000582448 TOXO94900 526 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TFAP2AP05549 437 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 KLK2P20151 261 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 CHRNB4P30926 498 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 GPR4P46093 362 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 PCYT1AP49585 367 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 MEOX1P50221 254 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 CTBP2P56545 445 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 PMPCAQ10713 525 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 CBFBQ13951 182 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 SNAPC1Q16533 368 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TMEM236Q5W0B7 351 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 C12orf73Q69YU5 71 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 KCTD8Q6ZWB6 473 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TMPRSS11FQ6ZWK6 438 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 MARCH3Q86UD3 253 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 SATL1Q86VE3 508 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TGIF2LYQ8IUE0 185 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 STX19Q8N4C7 294 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 RPRMLQ8N4K4 120 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 ACBD4Q8NC06 268 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 FAM71CQ8NEG0 241 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 OR2T33Q8NG76 320 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 LILRB4Q8NHJ6 448 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 FAM57AQ8TBR7 257 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 FANK1Q8TC84 345 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 DGCR14Q96DF8 476 aaKnown RBP9.19□□□□□ -0.94
SS18-221ENST00000582448 PRSS27Q9BQR3 290 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 COPS4Q9BT78 406 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TSSK6Q9BXA6 273 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 POLDIP3Q9BY77 421 aaKnown RBP9.19□□□□□ -0.94
SS18-221ENST00000582448 C12orf10Q9HB07 376 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 MED17Q9NVC6 651 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TVP23BQ9NYZ1 205 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 FLRT3Q9NZU0 649 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 CPAMD8Q8IZJ3 1885 aa9.19□□□□□ -0.94
SS18-221ENST00000582448 TRIM64CA6NLI5 447 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 CLCA1A8K7I4 914 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 FAM47E-STBD1D6RA91 191 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 E9PQ18 207 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SCO2O43819 266 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 XPNPEP2O43895 674 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 PIP5K1CO60331 668 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 NME2P1O60361 137 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 THY1P04216 161 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 CXCR1P25024 350 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 EVI2BP34910 448 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SLC1A3P43003 542 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 HTR3AP46098 478 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SLC9A3P48764 834 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 CYB561P49447 251 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 P2RX1P51575 399 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SH3BGRP55822 239 aaPredicted RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 CRYZQ08257 329 aaKnown RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 C17orf67Q0P5P2 114 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SNTB1Q13884 538 aaKnown RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 CD226Q15762 336 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 NEDD8Q15843 81 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 NDUFAF6Q330K2 333 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 ZBED5Q49AG3 693 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 FNDC7Q5VTL7 733 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 OPN5Q6U736 354 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 Q71RC1 249 aaPredicted RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 OAFQ86UD1 273 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 NAV3Q8IVL0 2385 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 DND1Q8IYX4 353 aaKnown RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 C10orf53Q8N6V4 93 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 POGLUT1Q8NBL1 392 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 OR5W2Q8NH69 310 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 B4GALNT2Q8NHY0 566 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 TMEM234Q8WY98 164 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 RORBQ92753 470 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 RFKQ969G6 155 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SGTBQ96EQ0 304 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 SH3YL1Q96HL8 342 aaPredicted RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 SCN2AQ99250 2005 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 DEFB127Q9H1M4 99 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 LIME1Q9H400 295 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 DUSP21Q9H596 190 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 EGLN3Q9H6Z9 239 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 IL20Q9NYY1 176 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 KLRF1Q9NZS2 232 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 H2AFY2Q9P0M6 372 aaPredicted RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 BAIAP2Q9UQB8 552 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 RPL36Q9Y3U8 105 aaKnown RBP9.18□□□□□ -0.94
SS18-221ENST00000582448 TACC2O95359 2948 aa9.18□□□□□ -0.94
SS18-221ENST00000582448 A0A087WUJ7 227 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 TRBV23-1A0A0A0MS06 115 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 TLX2O43763 284 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 FADS1O60427 444 aa9.17□□□□□ -0.94
SS18-221ENST00000582448 BCAS1O75363 584 aaPredicted RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 WBP4O75554 376 aaKnown RBP9.17□□□□□ -0.94
SS18-221ENST00000582448 OR2J2O76002 312 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms