RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SELENOFO60613 162 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 TRAPPC6AO75865 159 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 TFP02787 698 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SCG5P05408 212 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 FKBP2P26885 142 aaKnown RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 HCCSP53701 268 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SOX8P57073 446 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SLC35A1P78382 337 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 POU3F1Q03052 451 aaPredicted RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 ZNF85Q03923 595 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 FOXO1Q12778 655 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 CDC20Q12834 499 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 POU4F2Q12837 409 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 FOXC1Q12948 553 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 MLLT11Q13015 90 aaPredicted RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 SPCS2Q15005 226 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SSX1Q16384 188 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 TBC1D25Q3MII6 688 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 LINC01590Q5TEZ4 76 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 AGAP7PQ5VUJ5 663 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 LYPD4Q6UWN0 246 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 TMPPEQ6ZT21 453 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SLC35D2Q76EJ3 337 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ERI1Q8IV48 349 aaKnown RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 SULF2Q8IWU5 870 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SLC35F2Q8IXU6 374 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 PM20D2Q8IYS1 436 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ALDH16A1Q8IZ83 802 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ACBD7Q8N6N7 88 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 POMGNT2Q8NAT1 580 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ZNF248Q8NDW4 579 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ADPRHL1Q8NDY3 354 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 MDS2Q8NDY4 140 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 FAM83FQ8NEG4 500 aaPredicted RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 OR52N1Q8NH53 320 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 OR14L1PQ8NHC6 308 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SPRYD4Q8WW59 207 aaPredicted RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 RPL3LQ92901 407 aaKnown RBP9.43□□□□□ -0.9
SS18-217ENST00000580958 AGAP4Q96P64 663 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 SNX18Q96RF0 628 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 PIGQQ9BRB3 760 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ALG12Q9BV10 488 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 ALG8Q9BVK2 526 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 OR51E2Q9H255 320 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 INPP5EQ9NRR6 644 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 KLK13Q9UKR3 277 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 NPIPA1Q9UND3 350 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 POLHQ9Y253 713 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 B3GALT5Q9Y2C3 310 aa9.43□□□□□ -0.9
SS18-217ENST00000580958 A0A0J9YW62 118 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 PRSS37A4D1T9 235 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 OR5H15A6NDH6 313 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 A6NIZ1 184 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF814B7Z6K7 855 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 DCTN6O00399 190 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 AIREO43918 545 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 PMS2P2O95744 297 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 BCL10O95999 233 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 LALBAP00709 142 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 IFNGR1P15260 489 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 KLK2P20151 261 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RFC3P40938 356 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 P2RY4P51582 365 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 CCL11P51671 97 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RAP1BP61224 184 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 VBP1P61758 197 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 NCS1P62166 190 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RAP1AP62834 184 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RAC1P63000 192 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ACTC1P68032 377 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ACTA1P68133 377 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 HSF1Q00613 529 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RUNX1T1Q06455 604 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 NFATC3Q12968 1075 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 MFAP5Q13361 173 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF239Q16600 458 aaKnown RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 DEFB109BQ30KR1 87 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 WIPI1Q5MNZ9 446 aaPredicted RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 EEF1A1P5Q5VTE0 462 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 SLC25A25Q6KCM7 469 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF322Q6U7Q0 402 aaPredicted RBP9.42□□□□□ -0.9
SS18-217ENST00000580958 TMPRSS11AQ6ZMR5 421 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 PXKQ7Z7A4 578 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ADCK1Q86TW2 530 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ATCAYQ86WG3 371 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 WDFY1Q8IWB7 410 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 UEVLDQ8IX04 471 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RFLNBQ8N5W9 214 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZFP41Q8N8Y5 198 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF511Q8NB15 262 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF485Q8NCK3 441 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 OR2T4Q8NH00 348 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 TM9SF4Q92544 642 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 MIB2Q96AX9 1013 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 TXNDC15Q96J42 360 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 SFXN2Q96NB2 322 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ARHGAP9Q9BRR9 750 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 SYT4Q9H2B2 425 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 RERGLQ9H628 205 aa9.42□□□□□ -0.9
SS18-217ENST00000580958 ZNF552Q9H707 407 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms