RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GALNT9Q9HCQ5 603 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 MRPS7Q9Y2R9 242 aaKnown RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 C17orf51A8MQB3 221 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 H7C1C5 153 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 AIPO00170 330 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 GSTZ1O43708 216 aaPredicted RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 GMFGO60234 142 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 CDC40O60508 579 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS53-220ENST00000576149 TMEM127O75204 238 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 RPP14O95059 124 aaKnown RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 C1QBP02746 253 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 BGLAPP02818 100 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 S100A1P23297 94 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ITPKBP27987 946 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 CSF2RBP32927 897 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 MAGEB1P43366 347 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 GZMKP49863 264 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 LCN6P62502 163 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 PLCXD2Q0VAA5 305 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 FAPQ12884 760 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 ALKBH1Q13686 389 aaKnown RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 EEF1A1P5Q5VTE0 462 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 SIAH3Q8IW03 269 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 OR1N1Q8NGS0 311 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 MNTQ99583 582 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 TRAF4Q9BUZ4 470 aaPredicted RBP9.14□□□□□ -0.95
VPS53-220ENST00000576149 SLC25A18Q9H1K4 315 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 DPAGT1Q9H3H5 408 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 NIPAL2Q9H841 368 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 FRRS1LQ9P0K9 344 aa9.14□□□□□ -0.95
VPS53-220ENST00000576149 TRAV36DV7A0A075B6V5 113 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 A0A087WV48 116 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 A0A0A6YYJ9 748 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ITGA10O75578 1167 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 DHFRP00374 187 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 RENP00797 406 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 GLB1P16278 677 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 PGCP20142 388 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 PNLIPRP2P54317 469 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 Q5BKY6 102 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 HES5Q5TA89 166 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ARHGAP40Q5TG30 622 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 C1QL3Q5VWW1 255 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 FAM199XQ6PEV8 388 aaPredicted RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 POMZP3Q6PJE2 187 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 SLC29A4Q7RTT9 530 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 CMTM4Q8IZR5 234 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 SLC25A45Q8N413 288 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ZNF441Q8N8Z8 693 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 OMA1Q96E52 524 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ELF4Q99607 663 aaPredicted RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 TBL1XR1Q9BZK7 514 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 VN1R1Q9GZP7 353 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 TSPAN10Q9H1Z9 355 aaPredicted RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 SLA2Q9H6Q3 261 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 WDR76Q9H967 626 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 TAS2R5Q9NYW4 299 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 COPS7AQ9UBW8 275 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 NUBP2Q9Y5Y2 271 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 A0A1B0GX78 115 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 C7orf66A4D0T2 115 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 TVP23AA6NH52 213 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 OR6C76A6NM76 312 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 AKR7A3O95154 331 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 TCRBP04435 133 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 PRKCAP17252 672 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ALOX5APP20292 161 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 DPP4P27487 766 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ABCD3P28288 659 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 EVI2BP34910 448 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 GPLD1P80108 840 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 EGR3Q06889 387 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 MAB21L1Q13394 359 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 SMAD2Q15796 467 aaKnown RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 Q499Y3 187 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 BCL2L15Q5TBC7 163 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 C1orf189Q5VU69 101 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 PRSS45Q7RTY3 260 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 PRSS58Q8IYP2 241 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ZNF433Q8N7K0 673 aaPredicted RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 OR5AK2Q8NH90 309 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ZFAND1Q8TCF1 268 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 SMIM4Q8WVI0 70 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 ZNF501Q96CX3 271 aaPredicted RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 SCMH1Q96GD3 660 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 KLHL15Q96M94 604 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 DPYSL5Q9BPU6 564 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 C7orf50Q9BRJ6 194 aaKnown RBP9.13□□□□□ -0.95
VPS53-220ENST00000576149 PTDSS2Q9BVG9 487 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 SYT4Q9H2B2 425 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 NUDT15Q9NV35 164 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 V9GY05 133 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 EML5Q05BV3 1969 aa9.13□□□□□ -0.95
VPS53-220ENST00000576149 TRAV6A0A075B6T7 132 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 TRBV5-5A0A0J9YX44 114 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 KHNYNO15037 678 aaKnown RBP9.12□□□□□ -0.95
VPS53-220ENST00000576149 ARHGEF9O43307 516 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 SCO2O43819 266 aa9.12□□□□□ -0.95
VPS53-220ENST00000576149 WISP1O95388 367 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms