RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TCRBV9S1A1TA0A576 114 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 HMX2A2RU54 273 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 BTBD17A6NE02 478 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 ZNF500O60304 480 aaPredicted RBP13.39□□□□□ -0.27
VPS53-218ENST00000575207 IGHV1-69P01742 117 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 LCKP06239 509 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 CHRM4P08173 479 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 CD55P08174 381 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 MMP9P14780 707 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 HMOX2P30519 316 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 PGM1P36871 562 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 CFHR2P36980 270 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 RAB39AQ14964 217 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 RASA2Q15283 850 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 GPR68Q15743 365 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 EMBQ6PCB8 327 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 SIGLEC11Q96RL6 698 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 OSGIN1Q9UJX0 560 aa13.39□□□□□ -0.27
VPS53-218ENST00000575207 POLR3HQ9Y535 204 aaPredicted RBP13.39□□□□□ -0.27
VPS53-218ENST00000575207 E7ESA3 106 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 SMIM24O75264 130 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 CD28P10747 220 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 SNRPBP14678 240 aaKnown RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 FRKP42685 505 aaPredicted RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 IDH2P48735 452 aaKnown RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 POLR2HP52434 150 aaKnown RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 RBBP4Q09028 425 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 CAMK2DQ13557 499 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 AP1ARQ63HQ0 302 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 ZFAND6Q6FIF0 208 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 KLBQ86Z14 1044 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 PAQR4Q8N4S7 273 aaPredicted RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 SDR9C7Q8NEX9 313 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 METTL6Q8TCB7 284 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 ZNF764Q96H86 408 aaPredicted RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 PLEKHA8Q96JA3 519 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 RHOXF2Q9BQY4 288 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 OR51B6Q9H340 312 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 ADPRHL2Q9NX46 363 aa13.38□□□□□ -0.27
VPS53-218ENST00000575207 FAF1Q9UNN5 650 aaPredicted RBP13.38□□□□□ -0.27
VPS53-218ENST00000575207 ZSCAN5BA6NJL1 495 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 BCAS1O75363 584 aaPredicted RBP13.37□□□□□ -0.27
VPS53-218ENST00000575207 UGT2B17O75795 530 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 RPS2P15880 293 aaKnown RBP13.37□□□□□ -0.27
VPS53-218ENST00000575207 EPHA3P29320 983 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 STX2P32856 288 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 CLDN17P56750 224 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 PMS2P3Q13401 168 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 ARHGAP11BQ3KRB8 267 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 ZNF385BQ569K4 471 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 TMEM139Q8IV31 216 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 PPP1R35Q8TAP8 253 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 EGLN2Q96KS0 407 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 SDF2Q99470 211 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 BCL2L14Q9BZR8 327 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 PPA2Q9H2U2 334 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 ZNRD1Q9P1U0 126 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 RASD1Q9Y272 281 aa13.37□□□□□ -0.27
VPS53-218ENST00000575207 ALMS1Q8TCU4 4167 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 PLSCR5A0PG75 271 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 SCN2BO60939 215 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 MFN2O95140 757 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 KRT16P08779 473 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 VSIG10L2P0DP72 767 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 TACR3P29371 465 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 UCP2P55851 309 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 COX10Q12887 443 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 ZNF813Q6ZN06 617 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 OR2T6Q8NHC8 308 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 FAM76AQ8TAV0 307 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 PYROXD1Q8WU10 500 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 PPCDCQ96CD2 204 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 CITED2Q99967 270 aaPredicted RBP13.36□□□□□ -0.27
VPS53-218ENST00000575207 A4GALTQ9NPC4 353 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 MIOXQ9UGB7 285 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 ZDHHC8Q9ULC8 765 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 SLC35A3Q9Y2D2 325 aa13.36□□□□□ -0.27
VPS53-218ENST00000575207 TOX4O94842 621 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 UBL3O95164 117 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 HSD17B3P37058 310 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 LIPAP38571 399 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 CLCQ05315 142 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 TP53BP2Q13625 1128 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 TCTEX1D4Q5JR98 221 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 TMEM255AQ5JRV8 349 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 CYS1Q717R9 158 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 VASH1Q7L8A9 365 aaPredicted RBP13.35□□□□□ -0.27
VPS53-218ENST00000575207 LRRC8AQ8IWT6 810 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 ICA1LQ8NDH6 482 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 PIK3C3Q8NEB9 887 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 C10orf82Q8WW14 230 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 ASCL2Q99929 193 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 TAPBPLQ9BX59 468 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 CYSLTR2Q9NS75 346 aa13.35□□□□□ -0.27
VPS53-218ENST00000575207 LSM4Q9Y4Z0 139 aaKnown RBP13.35□□□□□ -0.27
VPS53-218ENST00000575207 ZNF879B4DU55 563 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 RAD51CO43502 376 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 ENSAO43768 121 aaKnown RBP13.34□□□□□ -0.27
VPS53-218ENST00000575207 FCMRO60667 390 aa13.34□□□□□ -0.27
VPS53-218ENST00000575207 SNAP29O95721 258 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms